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NC_048155.1__YP_009819889.1__HOV12_gp10__00010

Bact-Vir

NC_048155.1__YP_009819889.1__HOV12_gp10__00010

Identity

Accession:
NC_048155 ↗
Kingdom:
phage

Quality

74.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 12-80
PDB
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1npyA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.63 46.0 3.58e-01 81.2% 100.0%
2h1yB01 3.40.366.10 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › Malonyl-Coenzyme A Acyl Carrier Protein, domain 2 0.62 53.0 3.75e-01 100.0% 81.9%
2ltuA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.61 42.0 4.42e-01 72.5% 85.5%
2wa6A02 1.10.418.10 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain 0.61 43.0 3.74e-01 75.4% 88.9%
6yigA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.60 48.0 4.52e-01 92.8% 100.0%
4s3mB02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.59 42.0 3.73e-01 76.8% 82.1%
3w4sA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.58 50.0 3.34e-01 95.7% 81.7%
1j1vA00 1.10.1750.10 Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain 0.58 42.0 3.86e-01 78.3% 76.6%
1tfkB00 1.20.120.650 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Colicin D 0.58 40.0 3.76e-01 72.5% 70.9%
8f2lE01 1.10.1740.110 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.57 43.0 3.94e-01 85.5% 89.9%
1l0oA00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.56 43.0 3.43e-01 82.6% 71.6%
1u84A00 1.10.340.20 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain 0.56 42.0 4.01e-01 81.2% 69.1%
2ikbC00 1.20.141.10 Mainly Alpha › Up-down Bundle › Chitosanase, subunit A; domain 1 › Chitosanase, subunit A, domain 1 0.55 44.0 3.46e-01 91.3% 51.6%
2abqA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.55 47.0 3.08e-01 95.7% 80.0%
4m0mA03 1.20.1270.430 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.54 38.0 3.68e-01 73.9% 72.2%
3b9qA01 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.54 40.0 3.68e-01 78.3% 64.0%
2lrmA00 1.10.890.30 Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › YmgD protein 0.54 39.0 3.65e-01 76.8% 79.8%
6fhpD00 1.10.390.10 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 0.53 39.0 4.10e-01 89.9% 87.1%
2z15A00 3.90.640.90 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › Anti-proliferative protein, N-terminal domain 0.53 40.0 3.46e-01 84.1% 63.9%
1g8pA02 1.10.8.80 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Magnesium chelatase subunit I, C-Terminal domain 0.52 40.0 3.90e-01 92.8% 74.4%
1dj8A00 1.10.890.10 Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › HNS-dependent expression A 0.52 38.0 3.65e-01 78.3% 81.0%
2genA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.52 36.0 2.68e-01 73.9% 61.2%
2h7oA01 1.20.120.1330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Rac1-binding domain, N-terminal GTPase binding subdomain 0.52 39.0 3.29e-01 82.6% 89.4%
6hqvA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 41.0 3.16e-01 89.9% 47.9%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.51 41.0 3.69e-01 92.8% 62.1%
1chuA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 37.0 2.56e-01 78.3% 91.4%
3jc6301 3.30.1640.10 Alpha Beta › 2-Layer Sandwich › mini-chromosome maintenance (MCM) complex, chain A, domain 1 › mini-chromosome maintenance (MCM) complex, chain A, domain 1 0.50 36.0 3.27e-01 100.0% 53.4%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4476042 102.1.1.6 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › Methyltransf_5 0.65 45.0 3.95e-01 72.5% 98.1%
5080933 159.1.2.0 alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related 0.63 49.0 4.03e-01 85.5% 77.7%
4960621 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.63 46.0 2.77e-01 78.3% 53.4%
3579091 103.15.1.1 alpha arrays › RuvA-C › Mitoribosomal protein mS23 › Mitoribosomal protein mS23 › MRP-S23 0.62 45.0 3.59e-01 75.4% 50.7%
1030234 103.1.1.21 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › AMPK_alpha_AID 0.61 42.0 4.42e-01 72.5% 85.5%
5024936 181.1.1.1 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N 0.61 44.0 4.30e-01 75.4% 69.3%
4363985 327.19.1.1 a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain › MutL_C 0.60 47.0 4.41e-01 88.4% 86.7%
4430885 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.60 47.0 4.05e-01 88.4% 76.5%
4305577 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.59 47.0 4.24e-01 89.9% 89.0%
4562076 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.59 46.0 4.05e-01 87.0% 82.9%
3946717 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.59 43.0 4.35e-01 79.7% 91.4%
3610967 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.57 48.0 4.08e-01 92.8% 82.6%
3254353 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.57 45.0 2.73e-01 84.1% 23.6%
3698243 604.9.1.0 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 0.57 43.0 4.06e-01 82.6% 74.1%
3433370 101.1.10.3 alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.57 47.0 4.23e-01 92.8% 66.0%
4097048 131.1.1.0 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like 0.56 46.0 3.32e-01 95.7% 33.9%
3592778 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.56 43.0 4.05e-01 82.6% 82.4%
3346187 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.56 41.0 4.18e-01 79.7% 91.4%
3236758 2006.1.1.44 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like 0.55 48.0 3.35e-01 100.0% 35.6%
3580700 148.1.3.10 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_6 0.54 40.0 3.49e-01 78.3% 64.8%
3390058 2006.1.1.44 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like 0.54 48.0 3.33e-01 100.0% 35.8%
3387513 2004.1.1.159 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.53 43.0 3.27e-01 92.8% 86.1%
3893929 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.53 42.0 3.51e-01 87.0% 80.8%
140745 101.1.1.5 alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.52 33.0 3.20e-01 72.5% 54.3%
4944630 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.51 44.0 3.52e-01 94.2% 48.9%
3646654 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.51 37.0 3.15e-01 94.2% 45.0%
4003130 524.1.1.1 alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p › RabGAP-TBC 0.50 39.0 3.18e-01 91.3% 87.1%
D2 medium residues 89-139
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cwoA01 1.20.58.1200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RNA silencing suppressor P21, N-terminal domain 0.80 55.0 4.81e-01 74.5% 50.0%
6jrpA01 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.79 57.0 5.33e-01 76.5% 95.1%
4ljyA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.78 53.0 3.49e-01 72.5% 18.8%
4ad9A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 51.0 4.29e-01 88.2% 42.9%
2odaA00 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.76 60.0 3.94e-01 84.3% 68.2%
2gv9A05 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.76 51.0 4.88e-01 76.5% 61.0%
1vp7A00 1.10.287.1040 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Exonuclease VII, small subunit 0.75 53.0 4.78e-01 76.5% 55.9%
3vm9A02 6.10.140.2110 Special › Helix non-globular › Helix Hairpins › 0.72 57.0 5.51e-01 88.2% 75.4%
3nrtA00 6.20.350.10 Special › Other non-globular › Actin; Chain A, domain 4 › 0.72 60.0 4.89e-01 92.2% 74.2%
3zilA00 1.25.10.60 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Rad61, Wapl domain 0.70 49.0 2.94e-01 74.5% 20.7%
4toiA02 1.10.287.610 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.69 46.0 4.76e-01 74.5% 72.9%
4f0cA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.68 48.0 3.48e-01 74.5% 32.6%
1t11A02 1.10.3120.10 Mainly Alpha › Orthogonal Bundle › Trigger factor, domain 2 › Trigger factor, C-terminal domain 0.67 57.0 4.04e-01 100.0% 33.1%
8hk0B03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.67 58.0 4.28e-01 100.0% 65.2%
3anwB00 1.20.58.2050 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 53.0 3.71e-01 90.2% 75.3%
3q8dA02 1.20.1440.120 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Recombination protein O, C-terminal domain 0.64 51.0 3.71e-01 92.2% 88.3%
1bo7A00 3.30.572.10 Alpha Beta › 2-Layer Sandwich › Thymidylate Synthase; Chain A › Thymidylate synthase/dCMP hydroxymethylase domain 0.62 55.0 3.37e-01 100.0% 90.8%
5z7rA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.61 43.0 4.28e-01 82.4% 69.2%
4m0mA03 1.20.1270.430 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.61 53.0 4.65e-01 100.0% 88.6%
7wj9A01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.61 50.0 3.11e-01 92.2% 88.1%
7ae2A01 1.20.120.580 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › bsu32300-like 0.61 49.0 3.80e-01 98.0% 72.3%
3vkgA11 1.20.920.20 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › 0.56 49.0 3.81e-01 98.0% 52.7%
3l4gB03 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.55 42.0 3.80e-01 84.3% 90.5%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3194358 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.82 58.0 3.40e-01 74.5% 60.6%
3704732 4095.1.1.0 alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain 0.75 58.0 4.87e-01 88.2% 50.6%
3456216 4163.1.2.1 alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF2 C-terminal domain-like › Sld5 0.74 57.0 4.30e-01 80.4% 37.3%
3946983 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.74 51.0 4.36e-01 72.5% 71.2%
4003837 4970.1.1.0 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.74 60.0 4.76e-01 98.0% 45.0%
5007853 101.1.2.192 alpha arrays › HTH › HTH › winged helix domain › B_lactamase-like_C 0.72 59.0 5.26e-01 88.2% 65.2%
5069661 632.2.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.71 62.0 5.18e-01 100.0% 58.9%
4003631 109.4.1.1578 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30504 0.71 59.0 3.86e-01 100.0% 37.6%
3483986 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.70 56.0 4.43e-01 84.3% 48.4%
3596754 101.7.1.0 alpha arrays › HTH › DEK-C › DEK-C 0.66 47.0 4.38e-01 88.2% 58.5%
1877593 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.61 54.0 3.41e-01 100.0% 33.2%
3904078 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.61 48.0 4.26e-01 84.3% 69.9%
3711217 101.7.1.0 alpha arrays › HTH › DEK-C › DEK-C 0.61 43.0 3.99e-01 78.4% 58.5%
3708809 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.58 39.0 3.70e-01 74.5% 56.9%