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YP_009819943.1

Arc-Vir

NC_048156__YP_009819943.1__HOV13-gp09__00009

Identity

Accession:
NC_048156 ↗
Protein ID:
YP_009819943.1 ↗
Kingdom:
archaea

Quality

83.0 mean pLDDT

Taxonomy

Trapavirae› Saleviricota› Huolimaviricetes› Haloruvirales› Pleolipoviridae› Betapleolipovirus› Halorubrum_pleomorphic_virus_12

TaxID: 2507578

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-52
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xzmZ00 3.30.1230.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 0.72 58.0 4.87e-01 94.2% 57.7%
3j7aZ00 3.30.1230.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 0.68 57.0 5.22e-01 100.0% 98.6%
2fd4A00 3.30.40.110 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › AvrPtoB, C-terminal domain 0.66 57.0 4.51e-01 96.2% 56.2%
1pu1A00 3.30.300.100 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like 0.64 31.0 2.58e-01 94.2% 25.3%
4ikbA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.62 43.0 3.33e-01 75.0% 38.0%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 39.0 3.04e-01 78.8% 30.0%
4of8A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 40.0 3.23e-01 71.2% 65.0%
3d8dA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 42.0 3.29e-01 86.5% 95.0%
4wksC02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.56 40.0 3.57e-01 73.1% 97.3%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 39.0 3.19e-01 76.9% 66.0%
1s4dE02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.54 40.0 3.11e-01 86.5% 89.2%
3ke2B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 38.0 3.19e-01 76.9% 67.7%
4g79A00 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.54 37.0 2.91e-01 75.0% 30.6%
1sazA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 45.0 3.23e-01 100.0% 94.9%
3gveA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.53 35.0 2.25e-01 71.2% 49.4%
6nvxB02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.53 37.0 3.31e-01 75.0% 80.5%
2jkgA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.52 40.0 2.92e-01 86.5% 83.6%
1bm9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 36.0 2.92e-01 76.9% 65.0%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.52 37.0 3.21e-01 78.8% 100.0%
2mh9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 36.0 2.75e-01 73.1% 76.4%
2od5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 41.0 3.51e-01 92.3% 90.1%
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 35.0 3.00e-01 75.0% 74.0%
2crfA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 42.0 3.27e-01 96.2% 88.0%
3zqmA00 6.10.140.2160 Special › Helix non-globular › Helix Hairpins › 0.50 33.0 3.23e-01 90.4% 61.0%
3u04A00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.50 38.0 2.81e-01 88.5% 51.7%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3934269 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.85 62.0 6.88e-01 76.9% 100.0%
3849360 376.1.3.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › RIM2a_ZnF 0.83 72.0 6.37e-01 100.0% 66.7%
5049822 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.80 64.0 6.74e-01 88.5% 100.0%
4961820 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.79 69.0 6.61e-01 100.0% 88.3%
3834127 377.1.1.47 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › C1-like_CT 0.74 58.0 5.78e-01 86.5% 81.8%
3902362 2004.1.1.81 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GBP 0.73 34.0 2.33e-01 88.5% 13.3%
3847164 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.71 64.0 5.39e-01 100.0% 64.7%
3274339 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.68 61.0 5.17e-01 100.0% 64.7%
4949606 323.1.1.0 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.68 53.0 3.43e-01 100.0% 18.0%
4028826 377.1.2.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger 0.68 58.0 4.41e-01 94.2% 40.8%
3487873 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.68 54.0 5.21e-01 90.4% 83.3%
3714738 377.1.1.6 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.68 54.0 4.15e-01 94.2% 38.3%
3467156 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.68 60.0 4.61e-01 96.2% 45.5%
3894100 376.1.1.9 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › RING_CBP-p300 0.67 54.0 4.65e-01 94.2% 57.8%
3611182 377.1.1.6 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e 0.67 54.0 4.70e-01 96.2% 58.7%
3519677 101.1.2.4 ↗ alpha arrays › HTH › HTH › winged helix domain › Forkhead 0.63 45.0 3.29e-01 75.0% 61.4%
4385229 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.60 41.0 2.33e-01 71.2% 29.8%
5018390 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 44.0 3.39e-01 78.8% 56.3%
3715056 207.1.1.24 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_8 0.59 49.0 3.22e-01 94.2% 21.3%
3752080 207.1.1.102 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1+LRR_8+LRR_14 0.58 47.0 3.01e-01 94.2% 45.0%
1731086 295.1.1.9 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › Imm42 0.58 46.0 3.35e-01 90.4% 96.1%
3253762 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.58 28.0 2.46e-01 88.5% 30.0%
3999247 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.57 38.0 3.71e-01 71.2% 96.7%
5075560 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 40.0 2.96e-01 76.9% 57.4%
4569125 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 47.0 3.00e-01 98.1% 24.2%
3180573 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 39.0 3.34e-01 80.8% 78.9%
4950861 2.10.1.1 ↗ beta barrels › OB-fold › CheW › CheW › CheW 0.54 45.0 3.35e-01 100.0% 43.9%
5060792 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.54 37.0 2.95e-01 76.9% 60.5%
3517917 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.53 44.0 4.14e-01 94.2% 98.5%
3221562 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.53 42.0 3.50e-01 100.0% 77.9%
3936730 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 39.0 3.13e-01 80.8% 87.3%
3493352 632.3.1.16 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain › ODR4-like 0.52 41.0 3.61e-01 88.5% 73.8%
3271686 388.1.1.0 ↗ few secondary structure elements › Huristasin-like › Huristasin-like › Huristasin-like 0.52 39.0 3.71e-01 82.7% 85.7%
3598369 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 37.0 2.98e-01 80.8% 63.5%
3741856 220.1.1.4 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.50 37.0 2.87e-01 82.7% 60.7%
3248453 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.50 36.0 3.65e-01 84.6% 84.0%