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NC_048165.1__YP_009820237.1__HOV22_gp02__00002

Bact-Vir

NC_048165.1__YP_009820237.1__HOV22_gp02__00002

Identity

Accession:
NC_048165 ↗
Kingdom:
phage

Quality

79.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Hodgkinviridae› Metamorphoovirus› Microbacterium_phage_Fireman

TaxID: 2530118

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-36
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3m7nA03 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.81 65.0 6.62e-01 88.9% 94.1%
1twfI01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.78 63.0 5.86e-01 91.7% 84.8%
2xzm901 6.20.50.180 Special › Other non-globular › N-terminal domain of TfIIb › 0.75 63.0 5.14e-01 100.0% 54.2%
2aklA01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.68 54.0 5.18e-01 94.4% 90.7%
2jneA00 2.10.290.10 Mainly Beta › Ribbon › Rubredoxin-like › YfgJ-like 0.66 52.0 4.43e-01 100.0% 57.7%
1m2vB03 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.62 44.0 3.96e-01 86.1% 59.7%
3gmiA02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.60 46.0 2.95e-01 94.4% 19.6%
1orrC00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.55 41.0 2.43e-01 86.1% 48.1%
2pvpA01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 42.0 3.16e-01 100.0% 92.4%
2vhlA02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.54 41.0 2.52e-01 100.0% 84.7%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4945757 375.1.1.7 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.91 70.0 7.47e-01 86.1% 100.0%
5053348 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.90 69.0 7.40e-01 83.3% 100.0%
4943324 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.86 62.0 6.00e-01 77.8% 70.0%
5015586 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.85 71.0 6.34e-01 94.4% 66.0%
5062738 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.85 65.0 6.80e-01 83.3% 100.0%
4962086 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.84 67.0 6.53e-01 88.9% 80.0%
4959206 2.1.1.51 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EXOSC1 0.84 68.0 4.50e-01 88.9% 82.7%
5050463 4294.1.1.0 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.84 67.0 5.71e-01 94.4% 55.0%
3654792 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.84 59.0 6.20e-01 75.0% 90.0%
5036890 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.83 67.0 4.51e-01 88.9% 45.6%
4967267 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.82 66.0 4.39e-01 88.9% 41.0%
3655803 2.1.1.123 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CDC24_OB3 0.82 60.0 3.73e-01 83.3% 14.6%
4933052 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.82 61.0 5.97e-01 83.3% 75.0%
4987517 2.1.1.7 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.82 65.0 4.40e-01 88.9% 86.0%
5008323 2.1.1.51 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EXOSC1 0.82 65.0 4.38e-01 88.9% 82.2%
4978231 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.81 64.0 4.39e-01 88.9% 45.6%
4990538 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.81 64.0 4.39e-01 88.9% 46.3%
5067766 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.81 64.0 4.32e-01 88.9% 86.8%
4934076 375.1.1.85 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Auto_anti-p27 0.81 60.0 5.81e-01 80.6% 72.5%
5012781 2.1.1.51 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EXOSC1 0.81 63.0 4.30e-01 88.9% 86.9%
4940391 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.81 64.0 4.37e-01 88.9% 89.6%
4967975 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.80 63.0 4.26e-01 88.9% 84.6%
4980462 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.80 65.0 4.44e-01 91.7% 88.8%
5025169 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.80 64.0 4.33e-01 91.7% 79.3%
5020293 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.80 67.0 6.28e-01 94.4% 75.6%
3679986 2.1.1.305 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C, REPA_OB_2 0.79 57.0 3.34e-01 80.6% 9.5%
3975147 375.2.1.1 ↗ few secondary structure elements › Rubredoxin-like › YfgJ-like › YfgJ-like › zinc-ribbons_6 0.79 59.0 6.13e-01 86.1% 100.0%
4989659 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.78 61.0 4.18e-01 88.9% 26.2%
5047811 375.1.1.85 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Auto_anti-p27 0.78 56.0 5.23e-01 77.8% 62.2%
4943988 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.78 65.0 6.57e-01 94.4% 97.1%
3674755 2.1.1.42 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.77 63.0 4.04e-01 97.2% 19.5%
4945330 4294.1.1.11 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › ResIII 0.77 63.0 5.10e-01 91.7% 47.1%
5035281 4294.1.1.0 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.76 56.0 5.48e-01 83.3% 75.0%
4929508 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.76 59.0 4.11e-01 88.9% 85.6%
3947313 375.2.1.0 ↗ few secondary structure elements › Rubredoxin-like › YfgJ-like › YfgJ-like 0.76 56.0 5.90e-01 86.1% 100.0%
5078764 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.76 57.0 3.97e-01 86.1% 25.0%
5077957 2.1.1.42 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.76 57.0 3.89e-01 83.3% 23.1%
4429397 2.1.1.42 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.75 58.0 3.76e-01 86.1% 18.2%
4963355 375.1.1.355 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF28087 0.75 55.0 5.67e-01 83.3% 100.0%
4028093 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.75 58.0 4.02e-01 88.9% 89.6%
5013019 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.74 61.0 5.59e-01 94.4% 68.0%
5066014 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.74 59.0 3.94e-01 88.9% 22.8%
4982959 3922.1.1.357 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Auto_anti-p27 0.73 61.0 4.41e-01 94.4% 36.0%
5013223 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.73 56.0 3.53e-01 88.9% 16.1%
3865962 2.1.1.42 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.72 55.0 3.55e-01 88.9% 17.3%
8020 375.1.1.40 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › YjdM_Zn_Ribbon 0.72 53.0 5.33e-01 86.1% 86.8%
3829075 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.72 54.0 3.55e-01 86.1% 18.8%
5047258 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 55.0 5.55e-01 88.9% 91.4%
3514931 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 53.0 5.25e-01 88.9% 85.0%
5023627 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.71 53.0 3.36e-01 88.9% 15.3%
4993944 2.1.1.42 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.71 51.0 3.49e-01 83.3% 20.7%
4961808 375.1.1.37 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.71 56.0 5.55e-01 97.2% 85.0%
3260584 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 54.0 5.23e-01 94.4% 77.8%
5057111 2.1.1.42 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.70 50.0 3.41e-01 80.6% 20.0%
8055 375.2.1.0 ↗ few secondary structure elements › Rubredoxin-like › YfgJ-like › YfgJ-like 0.69 49.0 5.06e-01 83.3% 93.5%
3262703 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.68 53.0 4.96e-01 94.4% 82.0%
3329411 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 50.0 4.69e-01 88.9% 64.0%
5058144 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 55.0 3.70e-01 94.4% 49.3%
5025801 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.67 51.0 3.31e-01 88.9% 17.8%
5011867 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.66 50.0 3.35e-01 88.9% 20.8%
4996238 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.66 49.0 3.30e-01 88.9% 19.4%
3275642 375.1.1.30 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 0.63 46.0 4.09e-01 94.4% 58.8%
3903267 6.1.1.4 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Ricin_B_lectin 0.62 47.0 3.42e-01 91.7% 65.8%
4928885 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 47.0 4.55e-01 91.7% 93.3%
3421203 386.1.1.20 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met 0.58 43.0 3.74e-01 83.3% 50.0%
4957592 375.1.1.327 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DZR 0.52 37.0 3.32e-01 80.6% 45.0%
3275646 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 38.0 2.52e-01 91.7% 31.9%