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NC_048169.1__YP_009820520.1__HOV26_gp001__00001

Bact-Vir

NC_048169.1__YP_009820520.1__HOV26_gp001__00001

Identity

Accession:
NC_048169 ↗
Kingdom:
phage

Quality

77.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Oneupvirus› Gordonia_phage_BrutonGaster

TaxID: 2530116

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-103
PDB
Domain cluster: rep: KR131710.1__AKC57518.1__HMPREF1993_00025__00024__D3-73_141-155
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2wssA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.89 58.0 5.86e-01 100.0% 66.7%
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.89 58.0 5.93e-01 100.0% 68.9%
3gqbA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.88 58.0 6.60e-01 100.0% 88.7%
2qf4A01 2.40.10.340 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 1 0.80 52.0 5.67e-01 100.0% 78.5%
3w1eA03 2.40.10.410 Mainly Beta › Beta Barrel › Thrombin, subunit H › FlgT, C-terminal domain 0.79 68.0 7.03e-01 100.0% 94.4%
2j5uA02 2.40.10.340 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 1 0.76 57.0 5.98e-01 100.0% 85.7%
2w5eA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.75 43.0 4.73e-01 82.8% 70.3%
3gwqA01 2.40.37.20 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › D-serine dehydratase-like domain 0.73 58.0 4.66e-01 100.0% 44.8%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.68 53.0 5.70e-01 100.0% 97.5%
2derA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.68 48.0 4.92e-01 93.5% 78.2%
4dt4A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.67 39.0 4.88e-01 75.3% 94.7%
4g6iC02 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.65 51.0 5.17e-01 100.0% 83.0%
1i8dA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.65 51.0 5.27e-01 100.0% 87.6%
2egvA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.65 40.0 4.71e-01 83.9% 89.4%
4i86A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.65 48.0 4.69e-01 94.6% 71.6%
1nxzA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.64 42.0 4.72e-01 83.9% 87.5%
4b3fX02 2.40.30.270 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.63 52.0 5.12e-01 100.0% 83.7%
1kjzA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.63 49.0 4.96e-01 94.6% 82.6%
1z85A01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.63 41.0 4.68e-01 89.2% 92.5%
1kzlA02 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.62 49.0 4.81e-01 100.0% 78.2%
5eanA01 2.40.30.270 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.62 50.0 4.83e-01 100.0% 76.9%
3wdhA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 46.0 4.56e-01 100.0% 76.0%
1vhkA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.61 42.0 4.64e-01 83.9% 90.4%
7oo1A01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.59 46.0 5.00e-01 93.5% 98.7%
4zgnB00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 47.0 4.54e-01 93.5% 75.7%
3qtgA02 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.59 49.0 4.96e-01 100.0% 89.4%
4qbuA03 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.58 35.0 4.09e-01 88.2% 86.4%
3girA02 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.57 44.0 4.62e-01 88.2% 89.5%
3gg8C03 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.56 49.0 4.92e-01 100.0% 91.8%
1v5vA02 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.56 43.0 4.40e-01 87.1% 83.7%
8eq1A01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.55 47.0 4.87e-01 97.8% 97.7%
1yx2A02 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.55 42.0 4.39e-01 87.1% 89.5%
4u4iA00 2.60.40.200 Mainly Beta › Sandwich › Immunoglobulin-like › Superoxide dismutase, copper/zinc binding domain 0.53 47.0 4.28e-01 100.0% 79.4%
2q7nA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 35.0 3.73e-01 98.9% 77.8%
1dobA02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.52 35.0 3.08e-01 92.5% 43.2%
7r6yA01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.52 47.0 4.72e-01 97.8% 98.9%
1vioA03 3.30.70.1560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Alpha-L RNA-binding motif 0.52 35.0 3.66e-01 91.4% 79.3%
4paaA04 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.51 43.0 4.00e-01 92.5% 83.8%
3r8qA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 37.0 3.77e-01 98.9% 79.8%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3975132 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.90 59.0 6.01e-01 100.0% 68.9%
2448699 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.90 59.0 6.85e-01 100.0% 91.2%
4316004 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.90 58.0 6.14e-01 100.0% 72.9%
4111597 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.90 58.0 6.96e-01 100.0% 95.4%
4407497 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.89 59.0 6.99e-01 100.0% 96.9%
1685099 1.1.7.51 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › NeqB_N 0.89 52.0 6.46e-01 97.8% 93.2%
3975044 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.88 62.0 6.90e-01 100.0% 90.7%
4197108 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.87 59.0 6.07e-01 100.0% 72.2%
4890345 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.83 59.0 6.13e-01 100.0% 80.0%
3735267 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.83 69.0 7.24e-01 100.0% 95.3%
1005534 1.1.7.37 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FlgT_C 0.79 68.0 6.99e-01 100.0% 93.3%
3386631 1.1.7.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Lum_binding 0.76 53.0 5.73e-01 100.0% 85.0%
3965822 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.75 64.0 6.54e-01 98.9% 92.2%
3385895 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.74 57.0 6.03e-01 100.0% 95.0%
4625449 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.74 62.0 6.37e-01 100.0% 91.1%
4157526 1.1.12.1 ↗ beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth 0.71 49.0 4.51e-01 94.6% 56.5%
3723768 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.71 59.0 6.04e-01 100.0% 90.0%
4382401 1.1.7.100 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PGBA_N 0.71 59.0 6.22e-01 100.0% 96.5%
3966310 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.71 62.0 6.18e-01 100.0% 93.7%
4948029 284.4.1.3 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain › FKBP26_C 0.70 37.0 4.99e-01 74.2% 98.0%
3452625 1.1.7.69 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › MOV-10_beta-barrel 0.70 55.0 5.39e-01 100.0% 78.0%
3574784 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 56.0 5.28e-01 100.0% 73.6%
4287778 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.68 47.0 4.82e-01 93.5% 73.3%
3966724 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.67 63.0 6.25e-01 98.9% 95.8%
4933883 284.4.1.1 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain › FKBP26_IF 0.67 36.0 4.71e-01 73.1% 98.0%
1789465 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 59.0 5.78e-01 95.7% 95.0%
4538458 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.65 46.0 4.92e-01 93.5% 85.0%
4270212 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.65 44.0 4.55e-01 93.5% 73.0%
4296283 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.65 45.0 4.72e-01 93.5% 78.8%
3391250 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 59.0 5.25e-01 100.0% 93.8%
3617006 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 54.0 5.13e-01 100.0% 79.1%
3575535 1.1.7.113 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AAA_11, AAA_12 0.63 53.0 3.38e-01 100.0% 18.5%
3590667 1.1.5.16 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › MreC 0.63 59.0 4.33e-01 100.0% 69.2%
3250056 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 56.0 5.13e-01 100.0% 84.0%
161224 1.1.8.4 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › eIF2_C 0.63 49.0 4.79e-01 94.6% 76.0%
4016558 1.1.7.46 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SMUBP-2_HCS1_1B 0.62 56.0 4.81e-01 100.0% 86.9%
3273490 1.1.7.46 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SMUBP-2_HCS1_1B 0.61 55.0 5.09e-01 100.0% 79.2%
3726608 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 54.0 4.92e-01 100.0% 75.0%
4118631 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.61 32.0 4.25e-01 71.0% 98.0%
4994399 1.1.15.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.59 51.0 5.12e-01 100.0% 91.6%
4379635 1.1.15.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.59 51.0 5.11e-01 100.0% 91.6%
3740846 1.1.7.46 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SMUBP-2_HCS1_1B 0.58 52.0 4.91e-01 100.0% 85.2%
4995896 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.58 52.0 4.65e-01 100.0% 76.9%
4228697 3613.1.1.2 ↗ beta barrels › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › NOL9_C 0.57 48.0 4.24e-01 91.4% 70.4%
1514552 244.1.1.5 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › FAD_binding_3 0.55 34.0 3.68e-01 88.2% 75.3%
4028638 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.55 41.0 4.16e-01 92.5% 81.1%
4958701 1.1.5.17 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.54 44.0 3.93e-01 89.2% 71.9%
4951499 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.54 39.0 4.36e-01 76.3% 96.0%
4101909 304.11.1.2 ↗ a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase › SAT 0.53 35.0 3.79e-01 90.3% 81.3%
3964259 11.1.1.1136 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF4198 0.52 42.0 3.99e-01 100.0% 73.6%
3779830 4.1.1.304 ↗ beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.52 33.0 3.42e-01 80.6% 66.7%
5003841 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.52 46.0 4.41e-01 100.0% 90.9%
3407227 66.1.1.1 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.51 39.0 3.57e-01 82.8% 90.4%
4341159 1.1.8.20 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Beta-barrel_CAF17_C 0.51 42.0 3.73e-01 92.5% 82.1%