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NC_048169.1__YP_009820539.1__HOV26_gp157__00020

Bact-Vir

NC_048169.1__YP_009820539.1__HOV26_gp157__00020

Identity

Accession:
NC_048169 ↗
Kingdom:
phage

Quality

68.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Oneupvirus› Gordonia_phage_BrutonGaster

TaxID: 2530116

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-73_90-103
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2iw3A02 1.20.1390.20 Mainly Alpha › Up-down Bundle › PWI domain › 0.65 47.0 4.61e-01 84.0% 68.9%
2eb1C00 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.65 47.0 3.77e-01 77.8% 66.3%
2nsaA00 1.10.3120.10 Mainly Alpha › Orthogonal Bundle › Trigger factor, domain 2 › Trigger factor, C-terminal domain 0.63 44.0 3.49e-01 72.8% 38.9%
4i8oA03 1.10.8.1130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Bacterial toxin RNase RnlA/LsoA, C-terminal Dmd-binding domain 0.63 47.0 5.09e-01 80.2% 95.5%
2m6uA00 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.62 46.0 4.67e-01 79.0% 86.6%
4uiqB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.60 44.0 3.62e-01 77.8% 76.5%
4akgA08 1.10.472.130 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Dynein motor, AAA2 domain, small subdomain 0.60 52.0 4.26e-01 100.0% 75.6%
2xheA03 3.90.830.10 Alpha Beta › Alpha-Beta Complex › Syntaxin Binding Protein 1; Chain A, domain 2 › Sec1/Munc18 (SM) protein, domain 3a 0.56 39.0 3.44e-01 71.6% 94.2%
3m03B00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.54 47.0 4.50e-01 98.8% 83.2%
1s7bA00 1.10.3730.20 Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › 0.54 41.0 3.85e-01 84.0% 67.0%
1ynbA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.53 43.0 3.46e-01 91.4% 62.3%
7oiyA01 3.90.70.130 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.53 44.0 3.22e-01 95.1% 82.4%
2btdA00 1.25.40.340 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › DhaL domain 0.53 39.0 2.97e-01 80.2% 84.7%
4zi3D00 1.20.1520.10 Mainly Alpha › Up-down Bundle › Adp-ribosylation factor-like protein 2-binding protein fold › ADP-ribosylation factor-like 2-binding protein, domain 0.52 37.0 3.21e-01 74.1% 64.8%
3safA02 1.10.150.80 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain 0.52 41.0 3.88e-01 100.0% 72.0%
4oe8C00 1.10.8.1170 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.50 38.0 3.76e-01 80.2% 86.2%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5078780 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.65 52.0 4.99e-01 86.4% 88.4%
4990106 5061.1.1.1 ↗ alpha complex topology › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › SecY 0.65 46.0 2.81e-01 72.8% 25.8%
3592370 150.5.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.62 42.0 3.75e-01 71.6% 60.0%
4960130 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.61 48.0 4.64e-01 100.0% 76.7%
3267538 1008.1.1.101 ↗ alpha bundles › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › BRCC36 C-terminal helical domain › NST1 0.61 44.0 3.76e-01 76.5% 96.3%
4437884 171.1.1.4 ↗ alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonucleas_3_3 0.61 48.0 3.91e-01 86.4% 71.0%
3274518 3755.4.1.0 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.60 43.0 3.65e-01 75.3% 81.5%
4242465 547.1.1.1 ↗ alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer 0.59 40.0 3.84e-01 70.4% 77.9%
3168927 304.48.1.104 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Ty3_capsid 0.58 44.0 4.48e-01 80.2% 87.5%
4210617 101.1.10.13 ↗ alpha arrays › HTH › HTH › Cyclin-like › DUF3452 0.58 48.0 4.06e-01 95.1% 86.2%
4941367 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.57 41.0 3.23e-01 75.3% 77.0%
3812000 7023.1.1.3 ↗ alpha bundles › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › helical ridge domain of D-alanyl transfer protein › MBOAT_2 0.57 41.0 3.58e-01 82.7% 49.6%
5068844 601.1.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.55 39.0 3.76e-01 74.1% 69.5%
4371240 632.7.1.55 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › DUF2605 0.54 37.0 3.53e-01 70.4% 71.6%
5058934 2004.1.1.1221 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PF27431 0.51 40.0 2.72e-01 86.4% 39.4%