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NC_048169.1__YP_009820596.1__HOV26_gp100__00077

Bact-Vir

NC_048169.1__YP_009820596.1__HOV26_gp100__00077

Identity

Accession:
NC_048169 ↗
Kingdom:
phage

Quality

75.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Oneupvirus› Gordonia_phage_BrutonGaster

TaxID: 2530116

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-61
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1iyjB03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.71 49.0 3.46e-01 80.4% 23.2%
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 49.0 4.82e-01 76.1% 91.8%
3r8yA01 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.68 49.0 4.47e-01 80.4% 86.4%
2fb7A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 49.0 4.10e-01 82.6% 87.5%
2l6oA01 2.40.10.320 Mainly Beta › Beta Barrel › Thrombin, subunit H › Uncharacterised protein PF13642 yp_926445, N-terminal domain 0.63 45.0 3.97e-01 78.3% 56.9%
1wjvA01 3.30.1490.490 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.61 42.0 4.09e-01 80.4% 64.7%
2f4nA01 3.40.50.10790 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › S-adenosyl-l-methionine hydroxide adenosyltransferase, N-terminal 0.60 51.0 3.68e-01 100.0% 70.9%
2aj7A00 2.30.290.10 Mainly Beta › Roll › BH3618-like › BH3618-like 0.58 41.0 2.88e-01 76.1% 38.2%
6xaxA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 42.0 3.48e-01 80.4% 49.4%
3b79A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.56 41.0 3.17e-01 84.8% 88.0%
1mhyD00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.56 42.0 2.42e-01 82.6% 55.3%
2vfrA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.56 39.0 2.93e-01 76.1% 31.5%
1ileA02 3.90.740.10 Alpha Beta › Alpha-Beta Complex › Isoleucyl-tRNA Synthetase; domain 2 › Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain 0.55 45.0 3.10e-01 100.0% 27.2%
1y7pB01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.54 37.0 3.39e-01 84.8% 98.8%
1y56A01 3.10.20.440 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 2Fe-2S iron-sulphur cluster binding domain, sarcosine oxidase, alpha subunit, N-terminal domain 0.53 45.0 3.61e-01 97.8% 83.0%
2jz6A01 2.30.170.40 Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L28/L24 0.52 37.0 3.68e-01 80.4% 74.0%
1ihnA00 3.40.1230.10 Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Mth938; Chain: A, › MTH938-like 0.51 38.0 2.94e-01 82.6% 33.6%
6m3aA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 36.0 3.30e-01 78.3% 71.2%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4964347 904.1.1.55 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › PF26046 0.84 64.0 6.54e-01 100.0% 86.7%
3385953 1.1.1.7 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › tRNA-synt_1_2 0.71 52.0 3.44e-01 80.4% 98.5%
146288 4187.2.1.0 ↗ a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 0.70 47.0 4.55e-01 78.3% 62.7%
3574017 822.1.1.2 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 0.69 52.0 4.54e-01 82.6% 57.1%
4265513 304.147.1.1 ↗ a+b two layers › Alpha-beta plaits › Tetrahydrodipicolinate acetyltransferase N-terminal domain › Tetrahydrodipicolinate acetyltransferase N-terminal domain › DapH_N 0.68 50.0 4.61e-01 80.4% 86.7%
3218303 379.1.1.3 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 0.68 49.0 5.01e-01 87.0% 82.2%
3353030 822.1.1.2 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 0.67 50.0 4.01e-01 84.8% 41.0%
3415617 379.1.1.1 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_1 0.67 50.0 4.92e-01 82.6% 78.0%
4005326 109.2.1.42 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › MGH1-like_GH 0.66 48.0 2.76e-01 82.6% 7.5%
3324543 4121.1.1.2 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like 0.66 47.0 2.99e-01 80.4% 29.1%
4994 822.1.1.1 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.66 49.0 4.19e-01 82.6% 51.3%
3669087 304.7.1.11 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › MORF_dom 0.65 47.0 4.60e-01 76.1% 70.0%
4294460 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.65 47.0 2.91e-01 80.4% 13.3%
4321315 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.64 50.0 3.01e-01 89.1% 17.1%
3407580 379.1.1.0 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.63 45.0 4.01e-01 82.6% 51.4%
5023508 275.1.1.5 ↗ a+b two layers › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase › Arc_PepC 0.63 48.0 3.99e-01 84.8% 60.0%
4609257 5.2.1.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.63 46.0 2.81e-01 80.4% 13.0%
3405249 379.1.1.3 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 0.62 46.0 4.51e-01 87.0% 73.6%
4186209 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.62 46.0 2.83e-01 80.4% 14.4%
3581513 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.62 45.0 3.81e-01 80.4% 82.5%
4151528 1077.1.1.1 ↗ few secondary structure elements › RelA zinc-finger domain › RelA zinc-finger domain › RelA zinc-finger domain › RelA_RIS 0.61 49.0 4.68e-01 100.0% 76.4%
4461643 379.1.1.3 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 0.61 46.0 4.35e-01 87.0% 68.3%
4274955 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.61 44.0 2.77e-01 80.4% 13.7%
4035911 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.61 44.0 2.80e-01 80.4% 15.0%
3635320 4027.1.1.0 ↗ beta barrels › all-beta domain in DNA topoisomerase IV alpha subunit › all-beta domain in DNA topoisomerase IV alpha subunit › all-beta domain in DNA topoisomerase IV alpha subunit 0.61 45.0 4.63e-01 80.4% 82.2%
4139949 379.1.1.0 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.61 45.0 4.76e-01 80.4% 95.0%
4073486 304.147.1.1 ↗ a+b two layers › Alpha-beta plaits › Tetrahydrodipicolinate acetyltransferase N-terminal domain › Tetrahydrodipicolinate acetyltransferase N-terminal domain › DapH_N 0.60 42.0 3.62e-01 80.4% 62.2%
3398226 379.1.1.3 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 0.59 45.0 4.43e-01 87.0% 80.0%
3398570 379.1.1.3 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 0.59 42.0 4.19e-01 82.6% 74.0%
None — 0.59 45.0 3.18e-01 89.1% 24.8%
3404175 379.1.1.0 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.58 44.0 4.25e-01 87.0% 76.4%
3783286 376.1.1.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ 0.58 49.0 4.58e-01 100.0% 86.7%
3534502 109.4.1.1310 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_TRIP12_N 0.57 47.0 2.63e-01 100.0% 26.8%
None — 0.56 46.0 3.09e-01 95.7% 58.4%
3783311 245.1.1.0 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.55 40.0 3.10e-01 78.3% 34.3%
3258059 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.54 37.0 3.34e-01 76.1% 93.3%
3776602 7590.1.1.7 ↗ a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › MID_MedPIWI 0.54 40.0 2.58e-01 84.8% 91.9%
3613426 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.54 39.0 3.33e-01 80.4% 66.3%
3927485 219.1.1.36 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C92 0.53 37.0 2.55e-01 78.3% 42.1%
3211717 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 33.0 3.47e-01 76.1% 85.7%
2161631 2484.1.1.81 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ALP_N 0.51 42.0 3.02e-01 100.0% 81.4%