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NC_048173.1__YP_009821108.1__HOV30_gp064__00064

Bact-Vir

NC_048173.1__YP_009821108.1__HOV30_gp064__00064

Identity

Accession:
NC_048173 ↗
Kingdom:
phage

Quality

87.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Derbicusvirus› Erwinia_phage_Derbicus

TaxID: 2530027

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-127
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xlpB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 47.0 3.46e-01 96.6% 69.0%
2fkcA01 3.40.1350.40 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.52 37.0 3.84e-01 92.4% 78.2%
5bukB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 47.0 3.23e-01 100.0% 82.2%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 30.0 3.60e-01 84.0% 88.0%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.51 30.0 3.33e-01 90.8% 72.3%
2ivdB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 45.0 4.04e-01 97.5% 97.6%
2i5bA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.51 41.0 3.24e-01 89.1% 94.8%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4024735 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.56 33.0 4.03e-01 91.6% 95.7%
5005811 3414.1.1.0 ↗ beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein 0.56 29.0 3.44e-01 83.2% 72.5%
5014673 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.56 31.0 3.62e-01 76.5% 78.8%
D2 high residues 142-248
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2mdrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.64 27.0 2.85e-01 90.7% 40.4%
1pn2B01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.60 28.0 2.57e-01 91.6% 31.1%
2nugB02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 23.0 2.80e-01 88.8% 49.3%
1di2A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 24.0 2.93e-01 90.7% 55.1%
7r97A02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 24.0 2.96e-01 89.7% 58.8%
1h2iA01 3.30.390.80 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 0.55 33.0 3.02e-01 96.3% 42.6%
5gqoA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 29.0 3.10e-01 90.7% 62.9%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3255190 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.64 37.0 3.79e-01 96.3% 58.4%
3962753 222.1.1.9 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydrat_N 0.59 28.0 2.96e-01 91.6% 47.4%
1871052 330.1.1.4 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22 0.55 33.0 2.79e-01 96.3% 33.5%
1168678 5084.5.1.4 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprD 0.52 29.0 3.67e-01 92.5% 100.0%
3445322 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 35.0 2.97e-01 95.3% 43.1%