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NC_048173.1__YP_009821157.1__HOV30_gp113__00113
Bact-VirNC_048173.1__YP_009821157.1__HOV30_gp113__00113
Identity
- Accession:
- NC_048173 ↗
- Kingdom:
- phage
Quality
66.3
mean pLDDT
Taxonomy
TaxID: 2530027
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-142
Domain cluster:
rep: IMGVR_UViG_3300020814_000341-3300020814-Ga0214088_182449110__D102-238
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4paaA05 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.68 | 37.0 | 4.68e-01 | 94.2% | 89.9% |
| 1wosA04 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.66 | 35.0 | 4.35e-01 | 94.9% | 82.6% |
| 2apoA03 | 3.30.70.3190 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 38.0 | 4.52e-01 | 94.9% | 87.0% |
| 2gysA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 35.0 | 4.27e-01 | 95.6% | 87.2% |
| 3o1lB01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.62 | 34.0 | 4.09e-01 | 82.5% | 81.8% |
| 7dl8C01 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.62 | 30.0 | 3.67e-01 | 73.7% | 70.8% |
| 4labA00 | 3.30.2350.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase | 0.62 | 36.0 | 3.23e-01 | 94.9% | 41.2% |
| 2bj3D02 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.61 | 32.0 | 3.93e-01 | 87.6% | 81.5% |
| 2raqA01 | 3.30.70.1340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MTH889-like domain | 0.61 | 32.0 | 3.93e-01 | 89.8% | 80.0% |
| 2go8A01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 30.0 | 3.86e-01 | 85.4% | 83.8% |
| 4nohA01 | 3.30.70.3060 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 29.0 | 3.92e-01 | 85.4% | 87.3% |
| 3gz7B00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 36.0 | 4.16e-01 | 94.9% | 82.7% |
| 2lqjA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.60 | 35.0 | 4.10e-01 | 90.5% | 83.0% |
| 1vioA03 | 3.30.70.1560 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Alpha-L RNA-binding motif | 0.60 | 32.0 | 3.90e-01 | 92.7% | 82.9% |
| 3w7bA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.60 | 33.0 | 3.94e-01 | 81.8% | 81.8% |
| 1gh8A00 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.59 | 34.0 | 4.03e-01 | 83.2% | 84.3% |
| 1bdfA01 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.59 | 38.0 | 4.26e-01 | 91.2% | 84.0% |
| 7dluA03 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 35.0 | 4.29e-01 | 87.6% | 100.0% |
| 5yppA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.58 | 31.0 | 3.69e-01 | 89.8% | 76.7% |
| 2dt9A02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.58 | 31.0 | 3.94e-01 | 87.6% | 89.9% |
| 2od4B01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 34.0 | 4.12e-01 | 88.3% | 89.9% |
| 3tupA02 | 3.30.70.380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain | 0.57 | 37.0 | 4.30e-01 | 91.2% | 94.8% |
| 2ca9A02 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.57 | 32.0 | 3.77e-01 | 92.0% | 82.0% |
| 5xamA02 | 3.30.70.3220 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 32.0 | 3.04e-01 | 86.9% | 44.7% |
| 6efyA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 34.0 | 3.86e-01 | 95.6% | 82.7% |
| 2v9kA04 | 3.30.70.3190 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 37.0 | 4.13e-01 | 87.6% | 88.1% |
| 6gmhK00 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.54 | 33.0 | 3.52e-01 | 90.5% | 69.6% |
| 3g2fA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 27.0 | 3.31e-01 | 77.4% | 73.6% |
| 3m05B01 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 28.0 | 3.28e-01 | 81.8% | 70.7% |
| 2y8yA02 | 3.30.70.1210 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 | 0.53 | 36.0 | 3.93e-01 | 80.3% | 83.5% |
| 3uebF00 | 3.30.300.100 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like | 0.52 | 36.0 | 4.09e-01 | 87.6% | 98.0% |
| 7szeB02 | 3.90.380.10 | Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 | 0.52 | 43.0 | 3.93e-01 | 90.5% | 94.6% |
| 4wgkA02 | 2.60.40.2300 | Mainly Beta › Sandwich › Immunoglobulin-like › Neutral/alkaline non-lysosomal ceramidase, C-terminal domain | 0.50 | 36.0 | 3.69e-01 | 96.4% | 75.9% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3386025 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.71 | 43.0 | 4.27e-01 | 97.1% | 56.6% |
| 3952346 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.71 | 45.0 | 4.42e-01 | 97.8% | 59.3% |
| 5039158 | 50.1.1.3 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Peptidase_S78 | 0.69 | 63.0 | 6.00e-01 | 100.0% | 95.0% |
| 3838089 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.68 | 42.0 | 4.24e-01 | 97.1% | 62.2% |
| 3317802 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.67 | 40.0 | 4.68e-01 | 94.9% | 84.2% |
| 3817212 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.67 | 35.0 | 4.79e-01 | 99.3% | 100.0% |
| 3788348 | 1.1.7.81 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel | 0.66 | 45.0 | 4.89e-01 | 96.4% | 83.5% |
| 4025731 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.66 | 36.0 | 3.20e-01 | 89.1% | 36.4% |
| 3986531 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.65 | 46.0 | 4.58e-01 | 97.8% | 70.7% |
| 3670830 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.64 | 36.0 | 4.65e-01 | 87.6% | 100.0% |
| 4880925 | 304.102.1.0 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase | 0.64 | 35.0 | 3.76e-01 | 91.2% | 60.5% |
| 4973457 | 304.16.1.1 ↗ | a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE | 0.62 | 36.0 | 4.35e-01 | 92.7% | 87.6% |
| 3379194 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.62 | 34.0 | 4.40e-01 | 86.9% | 96.0% |
| 5024024 | 304.16.1.1 ↗ | a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE | 0.62 | 37.0 | 4.33e-01 | 92.7% | 85.1% |
| 4634052 | 304.16.1.1 ↗ | a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE | 0.62 | 36.0 | 4.34e-01 | 92.7% | 88.6% |
| 4261231 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.61 | 39.0 | 4.24e-01 | 94.2% | 77.3% |
| 4292806 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.61 | 39.0 | 4.30e-01 | 96.4% | 81.0% |
| 4549948 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.61 | 39.0 | 4.12e-01 | 95.6% | 71.7% |
| 3486397 | 304.16.1.0 ↗ | a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like | 0.61 | 36.0 | 4.30e-01 | 92.7% | 88.8% |
| 4468514 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.61 | 33.0 | 4.13e-01 | 88.3% | 88.7% |
| 4666632 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.61 | 35.0 | 4.04e-01 | 80.3% | 77.0% |
| 3784654 | 304.8.1.1 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Thr_dehydrat_C | 0.61 | 34.0 | 4.04e-01 | 94.2% | 79.8% |
| 4236566 | 304.8.1.65 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT, PF27446 | 0.60 | 38.0 | 3.93e-01 | 95.6% | 65.4% |
| 3570963 | 304.16.1.1 ↗ | a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE | 0.60 | 36.0 | 3.92e-01 | 92.7% | 71.8% |
| 3965787 | 304.8.1.53 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › GlnD_5th | 0.59 | 38.0 | 3.75e-01 | 95.6% | 58.0% |
| 4186587 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.59 | 32.0 | 3.98e-01 | 82.5% | 87.5% |
| 5044954 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.59 | 32.0 | 4.00e-01 | 88.3% | 88.7% |
| 4390550 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.58 | 38.0 | 4.19e-01 | 96.4% | 83.8% |
| 3720272 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.58 | 32.0 | 3.68e-01 | 88.3% | 72.0% |
| 4376910 | 305.1.1.0 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase | 0.57 | 36.0 | 4.20e-01 | 92.7% | 90.5% |
| 3458742 | 304.8.1.1 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Thr_dehydrat_C | 0.57 | 32.0 | 3.65e-01 | 85.4% | 74.7% |
| 3261290 | 11.1.1.843 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 | 0.57 | 42.0 | 4.36e-01 | 100.0% | 84.0% |
| 3921212 | 11.1.1.96 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set | 0.57 | 35.0 | 4.00e-01 | 100.0% | 84.0% |
| 5053336 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.56 | 34.0 | 3.91e-01 | 89.8% | 82.0% |
| 5022932 | 304.130.1.1 ↗ | a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion | 0.56 | 31.0 | 3.72e-01 | 90.5% | 83.5% |
| 3286458 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.55 | 39.0 | 4.10e-01 | 96.4% | 80.8% |
| 3698884 | 304.46.1.1 ↗ | a+b two layers › Alpha-beta plaits › eEF1-gamma domain › eEF1-gamma domain › EF1G | 0.54 | 35.0 | 3.76e-01 | 96.4% | 75.7% |
| 3721344 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.54 | 32.0 | 3.72e-01 | 89.8% | 84.2% |
| 4933784 | 304.102.1.7 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C | 0.54 | 36.0 | 3.05e-01 | 90.5% | 41.3% |
| 3256764 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.53 | 40.0 | 4.18e-01 | 97.1% | 83.8% |
| 3232202 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 42.0 | 4.25e-01 | 100.0% | 85.7% |
| 3672469 | 304.55.1.18 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › ACT | 0.52 | 41.0 | 4.17e-01 | 91.2% | 84.6% |
| 4172598 | 304.8.1.5 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL | 0.51 | 35.0 | 3.85e-01 | 97.1% | 84.2% |
| 3690532 | 331.3.1.2 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Ring_hydroxyl_A | 0.51 | 42.0 | 3.70e-01 | 91.2% | 75.7% |
D2
medium
residues 144-235