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NC_048173.1__YP_009821170.1__HOV30_gp126__00126

Bact-Vir

NC_048173.1__YP_009821170.1__HOV30_gp126__00126

Identity

Accession:
NC_048173 ↗
Kingdom:
phage

Quality

64.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Derbicusvirus› Erwinia_phage_Derbicus

TaxID: 2530027

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 55-76_89-137
PDB
Domain cluster: rep: KX397364.2__ANZ48147.1__ASESINO_134__00122__D26-88
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3mtqB00 3.40.50.510 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase system, mannose-type IIA component 0.72 38.0 3.04e-01 83.1% 27.0%
2pusA05 1.10.1740.80 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.64 36.0 3.43e-01 78.9% 47.5%
3tl4X02 1.10.10.2420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.58 37.0 3.74e-01 73.2% 65.3%
5cegD00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.57 43.0 3.88e-01 83.1% 88.1%
1sg7A00 1.10.1740.70 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › ChaB 0.55 43.0 4.28e-01 87.3% 81.3%
2jqtA00 1.20.1280.40 Mainly Alpha › Up-down Bundle › Monooxygenase › HHA 0.54 34.0 3.71e-01 93.0% 78.9%
4fd4A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 40.0 2.89e-01 81.7% 89.2%
6he1B01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.52 29.0 3.05e-01 73.2% 60.9%
4u1cA01 4.10.860.10 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain 0.52 30.0 3.46e-01 76.1% 78.8%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3220837 397.7.1.0 ↗ few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 0.62 35.0 4.32e-01 80.3% 95.0%
3456717 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.61 38.0 4.03e-01 81.7% 69.2%
3263335 198.1.1.2 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.58 37.0 3.64e-01 74.6% 58.7%
3274932 6056.1.1.2 ↗ alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N 0.57 44.0 4.05e-01 81.7% 66.7%
5036694 148.1.3.4 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › CbbQ_C 0.54 35.0 3.15e-01 85.9% 45.7%