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NC_048173.1__YP_009821261.1__HOV30_gp217__00217

Bact-Vir

NC_048173.1__YP_009821261.1__HOV30_gp217__00217

Identity

Accession:
NC_048173 ↗
Kingdom:
phage

Quality

67.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 28-93
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1b10A00 1.10.790.10 Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain 0.82 68.0 5.73e-01 87.9% 56.7%
2x4hA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 51.0 4.02e-01 87.9% 33.3%
6xxvC00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.76 56.0 4.61e-01 80.3% 45.9%
3vm9A02 6.10.140.2110 Special › Helix non-globular › Helix Hairpins › 0.74 53.0 5.64e-01 74.2% 89.5%
2ktmA00 1.10.790.10 Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain 0.74 58.0 5.77e-01 87.9% 85.3%
3lynB00 1.20.150.10 Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein 0.73 62.0 5.08e-01 95.5% 51.6%
2cazD00 6.10.140.820 Special › Helix non-globular › Helix Hairpins › 0.73 49.0 5.15e-01 74.2% 76.7%
2bg1A01 3.90.1310.40 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › 0.73 53.0 5.05e-01 83.3% 66.2%
4hr1A00 1.20.1270.410 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.73 51.0 4.13e-01 72.7% 41.5%
4h63H01 1.20.58.1710 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.72 50.0 4.90e-01 72.7% 68.1%
2js5A00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.72 48.0 4.72e-01 72.7% 64.8%
1lrzA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.71 50.0 5.17e-01 74.2% 77.4%
4g6dB02 6.10.140.1800 Special › Helix non-globular › Helix Hairpins › 0.71 59.0 5.50e-01 90.9% 87.7%
2o8iA00 1.10.3330.10 Mainly Alpha › Orthogonal Bundle › UraD-like › Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase 0.70 58.0 4.40e-01 90.9% 97.4%
1sg2A00 3.30.910.20 Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › Skp domain 0.70 62.0 4.78e-01 97.0% 76.6%
1sg7A00 1.10.1740.70 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › ChaB 0.70 52.0 5.01e-01 80.3% 78.7%
3qo8A01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.69 48.0 4.08e-01 74.2% 45.3%
3q5dA02 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.69 55.0 4.89e-01 89.4% 59.8%
3h36A00 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.69 50.0 4.81e-01 100.0% 66.7%
4m70I00 1.20.5.4130 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.69 52.0 4.37e-01 80.3% 72.2%
1gvfB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.69 55.0 3.65e-01 89.4% 38.5%
6wxrA01 1.10.640.10 Mainly Alpha › Orthogonal Bundle › Myeloperoxidase, subunit C › Haem peroxidase domain superfamily, animal type 0.68 57.0 3.49e-01 97.0% 83.2%
1b3qA01 1.10.287.560 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Histidine kinase CheA-like, homodimeric domain 0.68 44.0 4.56e-01 72.7% 71.0%
3n98A01 3.20.110.10 Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain 0.68 48.0 2.92e-01 74.2% 82.2%
8etcb01 1.20.120.1190 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.68 56.0 4.27e-01 89.4% 98.6%
2yfaA02 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.67 55.0 4.57e-01 89.4% 94.0%
3ezhA00 1.20.120.960 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase NarX, sensor domain 0.67 54.0 4.47e-01 86.4% 90.4%
6e1kA01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.67 57.0 4.79e-01 93.9% 80.4%
5u4nA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.67 54.0 3.42e-01 90.9% 38.6%
3fixA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.67 49.0 3.69e-01 83.3% 31.5%
2mtqA00 1.20.58.130 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.67 39.0 3.83e-01 75.8% 53.4%
1g2nA00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.67 57.0 3.92e-01 97.0% 35.0%
8d3mA02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.67 55.0 3.82e-01 95.5% 33.8%
1xl3C00 1.20.1280.80 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.67 47.0 4.24e-01 74.2% 53.8%
3tklB01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 45.0 4.65e-01 71.2% 74.2%
7t7kA01 1.20.930.60 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.66 51.0 4.13e-01 81.8% 99.2%
1rp3A01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.65 51.0 4.78e-01 89.4% 68.2%
3ermB00 1.10.10.710 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PSPTO_1197 like 0.65 56.0 5.68e-01 97.0% 95.3%
1urfA00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.65 45.0 4.21e-01 72.7% 60.5%
2itbB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.64 53.0 3.76e-01 90.9% 52.5%
7s0rB01 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.64 48.0 4.63e-01 81.8% 82.9%
1mhyG02 1.20.1280.30 Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 2 0.63 35.0 3.43e-01 74.2% 50.7%
1wy9A00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.60 44.0 3.76e-01 86.4% 47.7%
3qkaE02 1.10.287.2460 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 35.0 4.09e-01 72.7% 93.0%
3r84B00 6.10.280.160 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Mediator of RNA polymerase II transcription subunit 22 0.58 50.0 4.65e-01 92.4% 77.5%
8igrI01 2.40.270.10 Mainly Beta › Beta Barrel › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; Domain 6 › DNA-directed RNA polymerase, subunit 2, domain 6 0.58 51.0 3.73e-01 97.0% 86.9%
1iuqA01 1.10.1200.50 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Glycerol-3-phosphate acyltransferase, alpha helical bundle, N-terminal 0.57 42.0 4.04e-01 78.8% 97.4%
3b5iA02 1.10.1200.220 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › 0.56 48.0 4.33e-01 98.5% 96.8%
1vi0A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.56 46.0 3.73e-01 98.5% 84.8%
1qv9A02 6.10.140.120 Special › Helix non-globular › Helix Hairpins › 0.53 47.0 4.07e-01 100.0% 70.9%
1sumB01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.52 45.0 3.82e-01 95.5% 62.6%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3588971 6026.1.1.0 alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain 0.86 72.0 6.88e-01 92.4% 78.7%
3260418 5043.1.1.0 extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like 0.85 60.0 6.14e-01 77.3% 75.4%
3690556 148.1.1.0 alpha arrays › Histone-like › Histone-related › Histone 0.84 63.0 6.58e-01 86.4% 86.7%
4029754 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.81 67.0 6.15e-01 90.9% 69.4%
5055976 4126.1.1.1 a/b three-layered sandwiches › beta-carbonic anhydrase-like › beta-carbonic anhydrase › beta-carbonic anhydrase › Pro_CA 0.81 67.0 4.68e-01 89.4% 50.0%
3916831 109.4.1.1198 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Meckelin 0.79 70.0 4.56e-01 100.0% 23.1%
5000270 3646.1.1.0 alpha complex topology › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters 0.79 70.0 4.84e-01 100.0% 35.5%
3972992 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.79 54.0 5.48e-01 74.2% 72.3%
3497236 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.79 70.0 4.58e-01 100.0% 24.2%
3487880 5063.1.1.0 alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK 0.78 62.0 6.28e-01 86.4% 100.0%
4564711 547.1.1.1 alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer 0.77 57.0 5.43e-01 83.3% 68.0%
4648753 605.1.1.278 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Attractin 0.77 61.0 6.41e-01 90.9% 93.3%
3970007 3502.1.1.0 alpha bundles › uncharacterized conserved protein › uncharacterized conserved protein › uncharacterized conserved protein 0.77 56.0 5.33e-01 92.4% 66.7%
4267174 614.1.1.24 alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain › GlutR_dimer 0.76 56.0 5.36e-01 83.3% 68.0%
4947351 601.33.1.0 alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain 0.75 60.0 4.41e-01 92.4% 33.1%
185221 3502.1.1.1 alpha bundles › uncharacterized conserved protein › uncharacterized conserved protein › uncharacterized conserved protein › YebG 0.75 54.0 5.46e-01 80.3% 76.1%
4929363 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.74 53.0 4.43e-01 75.8% 44.3%
3705250 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.74 62.0 4.53e-01 100.0% 33.9%
4305639 3826.1.1.25 alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › GlutR_dimer 0.74 53.0 5.06e-01 80.3% 65.3%
3512559 192.1.1.37 alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › DUF7753 0.74 64.0 6.44e-01 97.0% 100.0%
3290367 3470.1.1.0 extended segments › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain 0.74 58.0 5.86e-01 95.5% 84.6%
3619546 3712.1.1.0 a+b complex topology › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 › Mediator of RNA polymerase II transcription subunit 11 0.73 64.0 6.48e-01 95.5% 100.0%
5018642 5058.1.1.2 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st 0.73 58.0 4.86e-01 83.3% 55.2%
4242465 547.1.1.1 alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer 0.73 63.0 5.58e-01 95.5% 77.9%
3963947 3826.1.1.25 alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › GlutR_dimer 0.73 57.0 5.32e-01 89.4% 68.8%
3242033 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.72 54.0 4.72e-01 89.4% 53.0%
3909150 5063.1.1.15 alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › OCIA 0.72 63.0 6.03e-01 97.0% 97.3%
3386373 605.1.1.2 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › H-kinase_dim 0.72 48.0 4.90e-01 71.2% 70.8%
5050325 4333.1.1.0 a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain 0.71 53.0 3.47e-01 83.3% 18.6%
3566658 2006.1.4.33 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › Tim17 0.71 61.0 5.91e-01 97.0% 84.0%
3597348 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.71 61.0 3.96e-01 100.0% 21.3%
4674 192.7.1.1 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › FemAB 0.71 50.0 5.06e-01 74.2% 73.8%
3927398 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.71 62.0 5.24e-01 95.5% 62.9%
3312749 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.69 55.0 4.85e-01 92.4% 57.1%
3373039 192.17.1.0 alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like 0.68 52.0 4.40e-01 84.8% 50.4%
None 0.68 57.0 3.74e-01 92.4% 29.3%
5054424 5058.1.1.2 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st 0.67 56.0 5.22e-01 93.9% 73.8%
3229793 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.67 48.0 4.50e-01 78.8% 60.0%
3481731 148.1.1.18 alpha arrays › Histone-like › Histone-related › Histone › CENP-S 0.67 57.0 5.10e-01 98.5% 70.5%
3189791 601.19.1.18 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Mmc1_C 0.65 58.0 3.98e-01 100.0% 67.4%
3248199 601.30.1.1 alpha bundles › Four-helical up-and-down bundle › Helical bundle domain in hypothetical protein PH1320 › Helical bundle domain in hypothetical protein PH1320 › NOG1_N 0.62 48.0 3.67e-01 90.9% 35.5%
4067677 3826.1.1.25 alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › GlutR_dimer 0.62 53.0 5.06e-01 97.0% 80.8%
4012407 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.62 49.0 5.11e-01 89.4% 91.7%
3678035 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.61 52.0 5.12e-01 92.4% 85.7%