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NC_048176.1__YP_009821444.1__HOV33_gp060__00060

Bact-Vir

NC_048176.1__YP_009821444.1__HOV33_gp060__00060

Identity

Accession:
NC_048176 ↗
Kingdom:
phage

Quality

72.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Godonkavirus› Gordonia_phage_GodonK

TaxID: 2562192

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-92
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4aghA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.67 43.0 4.37e-01 72.8% 66.3%
4rnyA02 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 48.0 3.91e-01 82.7% 61.9%
4hn7A00 2.40.50.650 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 41.0 4.10e-01 71.6% 82.4%
3exmA01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.59 47.0 3.61e-01 88.9% 73.8%
3wucB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 39.0 3.29e-01 70.4% 78.8%
1x8bA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 39.0 3.93e-01 71.6% 97.6%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.57 43.0 4.18e-01 79.0% 85.4%
3jqoA01 2.40.128.260 Mainly Beta › Beta Barrel › Lipocalin › Type IV secretion system, VirB10/TraB/TrbI 0.57 42.0 3.53e-01 79.0% 55.0%
1ul7A00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.55 41.0 3.83e-01 79.0% 74.5%
2pcsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 48.0 3.92e-01 100.0% 59.9%
2vneA01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 46.0 3.77e-01 100.0% 59.5%
7jooC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 33.0 3.12e-01 74.1% 50.5%
4gq1A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 41.0 2.76e-01 88.9% 44.1%
3tfzB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 45.0 3.63e-01 100.0% 55.2%
2ns9A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 45.0 3.73e-01 100.0% 60.1%
1y00A00 2.60.40.4380 Mainly Beta › Sandwich › Immunoglobulin-like › Translational regulator CsrA 0.51 31.0 3.46e-01 92.6% 80.3%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4974588 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 46.0 4.83e-01 97.5% 90.7%
4597423 12.2.1.4 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Hyaluronate lyase-like, C-terminal domain › Hyaluronate lyase-like, C-terminal domain › Vanin_C 0.57 49.0 4.05e-01 96.3% 73.3%
3498392 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 41.0 3.65e-01 77.8% 65.5%
3391086 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.56 42.0 2.54e-01 77.8% 21.0%
3913070 331.4.1.3 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › AdenylateSensor 0.56 40.0 3.88e-01 77.8% 68.2%
3648057 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.56 38.0 2.52e-01 71.6% 17.0%
None — 0.55 41.0 2.56e-01 79.0% 18.8%
3428734 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.55 44.0 2.80e-01 87.7% 36.4%
4384965 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.54 37.0 3.81e-01 72.8% 93.8%
3454410 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.53 41.0 3.33e-01 84.0% 72.5%
4355722 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.52 38.0 3.65e-01 76.5% 75.8%
3660920 331.4.1.2 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF 0.52 44.0 3.73e-01 93.8% 65.2%
3433086 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.52 37.0 3.57e-01 76.5% 76.8%
3834563 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.52 33.0 3.35e-01 85.2% 65.0%
3599006 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.51 36.0 2.50e-01 75.3% 49.8%
4984607 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.51 37.0 3.56e-01 76.5% 67.4%
4003675 5.1.5.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N 0.51 43.0 2.80e-01 100.0% 27.3%
4310932 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.51 41.0 2.99e-01 91.4% 92.2%
3659455 331.4.1.2 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF 0.51 37.0 3.14e-01 79.0% 47.7%
2466103 265.1.1.2 ↗ a+b two layers › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › Phage_coat 0.51 44.0 3.75e-01 96.3% 83.2%
3925865 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.50 36.0 3.26e-01 76.5% 76.7%