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NC_048176.1__YP_009821579.1__HOV33_gp142__00195

Bact-Vir

NC_048176.1__YP_009821579.1__HOV33_gp142__00195

Identity

Accession:
NC_048176 ↗
Kingdom:
phage

Quality

65.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Godonkavirus› Gordonia_phage_GodonK

TaxID: 2562192

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-129
PDB
D2 high residues 134-212
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2dqlA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 59.0 5.17e-01 87.3% 60.9%
4bqqB02 3.90.1750.20 Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 0.66 50.0 3.77e-01 94.9% 33.7%
3l4gC01 3.30.1370.240 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.60 46.0 4.21e-01 82.3% 62.9%
1nltA01 2.60.260.20 Mainly Beta › Sandwich › HSP40/DNAj peptide-binding domain › Urease metallochaperone UreE, N-terminal domain 0.59 31.0 3.14e-01 79.7% 51.2%
1cx8A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.57 43.0 2.96e-01 82.3% 90.6%
2dchX02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.57 34.0 3.01e-01 73.4% 41.4%
3hm2A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 40.0 3.22e-01 78.5% 84.8%
3e0jB00 3.90.1030.20 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain 0.54 39.0 3.25e-01 75.9% 65.7%
7vb8A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 43.0 3.84e-01 87.3% 67.3%
2g2sA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.54 25.0 2.80e-01 72.2% 51.6%
1vm0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.54 42.0 4.02e-01 87.3% 72.0%
2p35A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 40.0 3.16e-01 82.3% 87.9%
1l3iA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 40.0 3.12e-01 83.5% 87.6%
3c19A01 3.30.70.1380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transcriptional regulatory protein pf0864 domain like 0.52 36.0 3.45e-01 91.1% 58.6%
3qv2A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 36.0 2.82e-01 77.2% 84.0%
6fdfA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 37.0 2.85e-01 78.5% 84.1%
2yxdA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 36.0 2.92e-01 78.5% 85.5%
2uuvB01 3.40.462.40 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidase, cap domain/gating helix 0.51 36.0 2.63e-01 78.5% 82.8%
1sqhA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 36.0 2.87e-01 75.9% 50.6%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4972556 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.84 63.0 6.16e-01 78.5% 87.1%
5082698 101.1.2.914 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF6015 0.80 56.0 5.33e-01 82.3% 63.3%
5082509 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.80 69.0 5.70e-01 91.1% 90.8%
4936984 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.80 62.0 5.36e-01 82.3% 59.3%
3655782 101.1.2.598 ↗ alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, POLR3C_WHD 0.80 62.0 4.05e-01 82.3% 21.7%
4941839 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.77 59.0 4.77e-01 81.0% 47.6%
3692895 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.77 65.0 4.58e-01 91.1% 72.2%
3829789 101.1.2.245 ↗ alpha arrays › HTH › HTH › winged helix domain › PORR 0.77 68.0 5.76e-01 96.2% 69.6%
5082704 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.76 62.0 4.56e-01 87.3% 77.4%
4201034 101.1.2.41 ↗ alpha arrays › HTH › HTH › winged helix domain › FokI_dom_2 0.75 65.0 5.20e-01 93.7% 80.0%
3468223 101.1.2.90 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_9 0.75 64.0 4.08e-01 91.1% 35.1%
3640260 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.75 63.0 4.59e-01 91.1% 80.5%
3485716 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.74 65.0 4.80e-01 93.7% 85.8%
3743779 101.1.2.31 ↗ alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.74 65.0 5.10e-01 93.7% 75.5%
4029392 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.74 64.0 4.77e-01 92.4% 82.2%
3938245 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.74 63.0 4.55e-01 92.4% 74.8%
4012739 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.73 64.0 5.26e-01 93.7% 80.0%
3488429 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.73 66.0 4.89e-01 96.2% 85.4%
4004118 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.73 63.0 4.68e-01 92.4% 84.9%
3223233 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.73 64.0 4.49e-01 94.9% 69.6%
3187460 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.72 63.0 4.74e-01 94.9% 84.9%
4971711 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 59.0 5.04e-01 88.6% 64.0%
4971999 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 59.0 5.01e-01 88.6% 64.0%
3597631 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 57.0 4.04e-01 87.3% 38.8%
4029192 101.1.2.236 ↗ alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD 0.70 59.0 3.75e-01 91.1% 37.3%
3741614 101.1.2.236 ↗ alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD 0.70 54.0 4.19e-01 82.3% 40.0%
3414623 101.1.2.566 ↗ alpha arrays › HTH › HTH › winged helix domain › CDT1, CDT1_C 0.68 55.0 3.67e-01 87.3% 27.1%
3713148 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 53.0 5.07e-01 92.4% 72.6%
3997193 5001.1.1.41 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.67 54.0 3.52e-01 88.6% 64.1%
5000735 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 51.0 3.93e-01 82.3% 37.1%
4508433 314.1.1.3 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d 0.66 50.0 3.21e-01 83.5% 16.8%
3236416 5001.1.1.41 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.65 51.0 3.34e-01 84.8% 55.6%
3932435 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.63 48.0 3.17e-01 81.0% 60.3%
4618987 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.60 42.0 3.64e-01 84.8% 47.2%
4976343 810.1.1.2 ↗ a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT 0.59 41.0 3.73e-01 74.7% 94.7%
3281285 304.6.1.1 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C 0.57 39.0 2.82e-01 72.2% 58.0%
4931230 304.114.1.0 ↗ a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.57 35.0 3.43e-01 78.5% 55.6%
4117256 101.1.2.88 ↗ alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.57 47.0 4.04e-01 93.7% 66.2%
3494392 3937.1.1.2 ↗ alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin 0.53 42.0 2.69e-01 84.8% 61.9%
3892186 327.11.2.23 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_PARP14_8 0.53 37.0 3.52e-01 81.0% 59.0%
4043605 304.5.1.7 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.52 38.0 3.77e-01 77.2% 96.5%
3628107 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 37.0 3.04e-01 74.7% 66.2%
2325515 304.5.1.1 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › P-II 0.52 42.0 3.95e-01 91.1% 98.0%
4961538 2002.1.1.256 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MSH_C 0.51 41.0 2.70e-01 94.9% 94.7%