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NC_048177.1__YP_009821599.1__HOV34_gp01__00001

Bact-Vir

NC_048177.1__YP_009821599.1__HOV34_gp01__00001

Identity

Accession:
NC_048177 ↗
Kingdom:
phage

Quality

92.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autoscriptoviridae› Bonnellvirus› Escherichia_phage_Lidtsur

TaxID: 2562235

Cluster

View cluster (20 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-129
PDB
Domain cluster: rep: NC_028850.1__YP_009203163.1__AVU16_gp07__00007__D5-127
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23780.2 best S-AdoMet_lyase 96.6 1.60e-27 98.4% 100.0%
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2y1rK00 3.30.70.1950 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 39.0 4.44e-01 97.7% 79.3%
5yppA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.66 43.0 4.96e-01 96.1% 94.4%
4oi3A00 3.30.70.3090 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ORF SCO4226, nickel-binding ferredoxin-like monomer 0.65 41.0 4.92e-01 80.5% 100.0%
1z1dB00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.62 45.0 4.48e-01 96.1% 72.5%
2iruA02 3.30.70.3300 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 54.0 5.30e-01 94.5% 89.9%
1r89A03 3.30.70.590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Poly(A) polymerase predicted RNA binding domain 0.61 49.0 4.91e-01 96.1% 82.8%
1pbuA00 3.30.70.1010 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Translation elongation factor EF1B, gamma chain, conserved domain 0.60 47.0 4.37e-01 99.2% 66.0%
5of3A00 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.59 51.0 3.82e-01 94.5% 52.4%
5t0oA02 3.30.70.1430 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.58 42.0 4.67e-01 94.5% 94.2%
4mt1A02 3.30.70.1430 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.58 42.0 4.65e-01 94.5% 94.2%
3h20A02 3.30.70.1790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RepB DNA-primase, N-terminal domain 0.58 42.0 4.61e-01 94.5% 95.1%
1vx7X00 3.30.1360.210 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.57 39.0 4.45e-01 70.3% 94.8%
4lniA02 3.30.590.10 Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › Glutamine synthetase/guanido kinase, catalytic domain 0.57 52.0 3.81e-01 100.0% 77.2%
1m55A00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.57 49.0 4.35e-01 96.9% 95.3%
2aj4B01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.54 40.0 3.33e-01 79.7% 96.4%
2xf1A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.53 34.0 3.52e-01 100.0% 67.2%
4xmqA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 43.0 4.25e-01 88.3% 87.2%
4akgA03 3.20.180.20 Alpha Beta › Alpha-Beta Barrel › Split barrel-like › Dynein motor heavy chain, linker domain, subdomain 3 0.52 33.0 3.87e-01 96.1% 97.6%
5l6gA02 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.51 44.0 3.72e-01 96.9% 79.0%
2g47A03 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.51 42.0 3.57e-01 91.4% 85.5%
4er8A00 3.30.70.1290 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transposase IS200-like 0.50 45.0 4.15e-01 100.0% 88.5%
3d7aA01 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.50 35.0 3.51e-01 72.7% 89.7%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3840041 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.75 69.0 5.72e-01 96.9% 77.6%
4995222 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.71 42.0 5.17e-01 78.9% 98.7%
4993850 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.69 38.0 4.34e-01 71.9% 72.6%
3286580 304.159.1.1 ↗ a+b two layers › Alpha-beta plaits › Alpha-beta plait domain in NisB › Alpha-beta plait domain in NisB › Lant_dehydr_C 0.66 46.0 5.16e-01 80.5% 92.0%
3789491 304.162.1.0 ↗ a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain 0.62 40.0 4.67e-01 100.0% 97.6%
4554731 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.60 51.0 4.16e-01 94.5% 50.9%
3782802 304.15.1.0 ↗ a+b two layers › Alpha-beta plaits › Viral DNA-binding domain › Viral DNA-binding domain 0.59 50.0 4.44e-01 90.6% 78.3%
4998612 862.1.1.1 ↗ a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.58 51.0 4.13e-01 95.3% 52.1%
3282845 304.8.1.26 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF3145 0.58 49.0 4.67e-01 91.4% 99.3%
3389107 304.9.1.95 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › DUF4780 0.57 41.0 4.49e-01 95.3% 90.5%
4959045 304.8.1.81 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › REP_ORF2-G2P 0.57 48.0 4.57e-01 94.5% 78.0%
4092955 304.20.1.4 ↗ a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › CAA_C 0.55 49.0 4.55e-01 96.9% 93.9%
3709350 304.31.1.0 ↗ a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase 0.55 49.0 4.44e-01 100.0% 93.3%
3493745 312.1.1.6 ↗ a+b three layers › HIT-like › HIT-related › HIT-related › CwfJ_C_2,CwfJ_C_1 0.55 41.0 3.47e-01 79.7% 79.4%
5078562 304.55.2.1 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like › Y1_Tnp 0.54 44.0 3.92e-01 88.3% 93.0%
3966291 886.1.1.0 ↗ a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain 0.54 48.0 4.53e-01 100.0% 88.7%
4358407 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.54 41.0 4.32e-01 79.7% 99.1%
4319487 304.41.1.1 ↗ a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N 0.54 47.0 4.40e-01 96.9% 88.1%
3900562 304.110.1.7 ↗ a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › TEX47 0.53 47.0 4.18e-01 99.2% 91.1%
3279592 304.4.1.14 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Dabb 0.52 47.0 4.77e-01 99.2% 98.5%
4174585 304.20.1.4 ↗ a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › CAA_C 0.52 47.0 4.40e-01 96.9% 92.2%
3180053 304.6.1.3 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.52 45.0 3.64e-01 96.1% 67.5%
4637527 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.52 42.0 4.25e-01 96.9% 88.0%
4024337 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.51 35.0 3.75e-01 71.1% 83.6%
151843 304.55.2.0 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like 0.50 45.0 4.15e-01 100.0% 88.5%
3973540 304.55.2.0 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like 0.50 44.0 4.13e-01 100.0% 95.8%