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NC_048178.1__YP_009821713.1__HOV35_gp60__00060

Bact-Vir

NC_048178.1__YP_009821713.1__HOV35_gp60__00060

Identity

Accession:
NC_048178 ↗
Kingdom:
phage

Quality

84.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-61
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xqyA03 2.60.40.3190 Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain 0.66 46.0 3.62e-01 75.0% 40.6%
3irzA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 47.0 3.95e-01 75.0% 45.5%
1ut9A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 46.0 3.89e-01 75.0% 58.2%
4p0dA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 46.0 3.71e-01 75.0% 39.1%
2x5pA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 45.0 3.79e-01 75.0% 45.2%
6fwvA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 44.0 3.93e-01 75.0% 48.9%
3b4vD01 3.90.290.10 Alpha Beta › Alpha-Beta Complex › Extracellular Matrix Fibrillin › TGF-beta binding (TB) domain 0.64 49.0 4.75e-01 86.7% 72.9%
2r6fA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.64 44.0 4.21e-01 73.3% 72.2%
4cj0A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 44.0 3.76e-01 70.0% 55.8%
1cduA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 44.0 3.72e-01 73.3% 70.4%
4nbiB00 3.50.80.10 Alpha Beta › 3-Layer(bba) Sandwich › D-tyrosyl-trna(Tyr) Deacylase; Chain: A; › D-tyrosyl-tRNA(Tyr) deacylase 0.62 42.0 3.17e-01 70.0% 87.4%
5icuA00 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 43.0 3.64e-01 73.3% 49.0%
2a74A02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.61 43.0 3.66e-01 75.0% 55.4%
3fsyB01 3.30.70.2010 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 46.0 3.91e-01 85.0% 80.6%
6u7jA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 42.0 3.71e-01 73.3% 56.2%
2jveA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.60 42.0 4.01e-01 73.3% 67.6%
4es8B02 2.60.40.3580 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 42.0 3.56e-01 75.0% 54.5%
3m1cA04 2.60.40.3190 Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain 0.59 42.0 3.33e-01 76.7% 45.5%
2pn5A02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.58 42.0 3.56e-01 76.7% 56.4%
3of1A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 41.0 3.22e-01 75.0% 70.7%
6u7iB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 40.0 3.55e-01 73.3% 55.4%
4jklA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 40.0 3.48e-01 73.3% 51.6%
3f1sB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 41.0 3.59e-01 75.0% 52.7%
7pjjA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 42.0 3.29e-01 76.7% 84.5%
1cidA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 42.0 4.00e-01 80.0% 66.2%
1vw4U00 3.30.1390.20 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L30/L7 0.57 41.0 3.83e-01 80.0% 81.7%
2p9rA00 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.57 39.0 3.37e-01 73.3% 50.0%
1hx6B01 2.70.9.30 Mainly Beta › Distorted Sandwich › Adenovirus Type 2 Hexon; domain 4 › Viral coat protein p3 0.57 39.0 2.70e-01 73.3% 52.8%
1wj3A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 39.0 3.43e-01 73.3% 54.8%
3afgA03 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.56 40.0 3.42e-01 76.7% 48.0%
2j1vA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 40.0 3.12e-01 76.7% 34.8%
1oj5A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 38.0 3.15e-01 71.7% 96.2%
1k42A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 38.0 2.82e-01 71.7% 52.4%
5c71A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 40.0 3.47e-01 76.7% 59.4%
7sqxA02 3.30.70.2150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 38.0 3.35e-01 75.0% 89.8%
3fn9A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 39.0 3.18e-01 76.7% 60.8%
2lfcA00 3.90.700.10 Alpha Beta › Alpha-Beta Complex › Flavocytochrome C3; Chain A, domain 1 › Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 0.55 44.0 3.44e-01 100.0% 74.4%
2r5oA01 2.70.50.60 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › abc- transporter (atp binding component) like domain 0.54 38.0 2.92e-01 75.0% 54.3%
2xa7M01 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.54 38.0 3.06e-01 75.0% 75.0%
1hx6A02 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.54 38.0 2.96e-01 75.0% 48.2%
7yh1A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.54 37.0 3.01e-01 73.3% 68.4%
2qh5B00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.53 44.0 2.92e-01 95.0% 21.9%
7rskA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 38.0 3.20e-01 76.7% 66.1%
4xpmB00 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.53 36.0 3.49e-01 71.7% 95.5%
3bgaA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 38.0 3.13e-01 76.7% 88.3%
4m4xA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 35.0 2.76e-01 70.0% 89.7%
8dkuA02 2.70.50.60 Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › abc- transporter (atp binding component) like domain 0.52 38.0 2.93e-01 80.0% 49.7%
4f3lA03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 35.0 2.80e-01 71.7% 84.4%
2j3tD01 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 38.0 3.09e-01 85.0% 93.3%
2qsdB02 3.50.100.10 Alpha Beta › 3-Layer(bba) Sandwich › protein il1583 fold › protein il1583 domain 0.51 41.0 3.80e-01 90.0% 80.8%
3ms6A00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.51 35.0 3.10e-01 73.3% 81.1%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3950412 11.1.4.130 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF1416 0.67 47.0 4.37e-01 75.0% 58.7%
4964937 821.1.1.15 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF7508 0.66 48.0 4.63e-01 78.3% 82.9%
3400352 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.66 48.0 5.05e-01 80.0% 88.9%
4942476 11.1.4.23 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg 0.65 45.0 4.09e-01 73.3% 53.8%
3588234 11.1.4.36 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › SpaA 0.65 46.0 3.91e-01 75.0% 53.0%
4938962 11.1.1.1410 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CarboxypepD_reg 0.65 46.0 3.94e-01 75.0% 58.9%
3925735 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.65 48.0 4.00e-01 80.0% 57.1%
3389022 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.64 48.0 5.12e-01 81.7% 98.0%
3927867 11.1.4.70 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › NOMO1-like_1st 0.64 45.0 3.91e-01 73.3% 60.0%
3798089 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.63 46.0 3.82e-01 78.3% 51.4%
3986635 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.63 45.0 3.53e-01 76.7% 48.1%
4991285 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.62 45.0 4.10e-01 76.7% 58.7%
3992801 11.1.1.532 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C6 0.62 42.0 3.68e-01 70.0% 57.8%
3652201 11.1.4.78 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › NOMO_8th 0.62 45.0 3.64e-01 76.7% 60.0%
5081326 11.1.1.608 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Por_Secre_tail 0.62 44.0 4.35e-01 76.7% 73.8%
4957238 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 44.0 3.63e-01 76.7% 59.1%
4001819 11.1.1.532 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C6 0.61 42.0 3.63e-01 71.7% 56.8%
3998997 389.1.2.9 few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › C6 0.61 42.0 3.69e-01 71.7% 58.9%
3920818 11.1.1.375 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › A2M,MG2,A2M_BRD 0.60 43.0 2.51e-01 75.0% 10.3%
4204478 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 43.0 3.57e-01 75.0% 81.0%
5064207 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.60 40.0 3.42e-01 70.0% 42.0%
4319035 11.1.1.608 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Por_Secre_tail 0.60 42.0 4.08e-01 75.0% 68.1%
3606070 7032.1.1.0 a+b two layers › Paratox › Paratox › Paratox 0.59 45.0 4.52e-01 83.3% 93.3%
3797412 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 42.0 3.75e-01 76.7% 55.6%
3628931 11.1.1.102 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › A2M_BRD 0.59 43.0 2.62e-01 80.0% 31.4%
1148130 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 42.0 3.52e-01 76.7% 53.3%
4568752 10.32.1.19 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PPC 0.58 41.0 3.38e-01 75.0% 42.7%
5014927 10.1.2.183 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PPC 0.58 41.0 3.38e-01 75.0% 42.7%
3505375 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 42.0 3.41e-01 76.7% 57.4%
4010374 223.1.1.156 a+b three layers › Profilin-like › sensor domains › sensor domains › GAPES3 0.58 39.0 3.13e-01 71.7% 81.7%
3273661 12.3.1.46 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › ComC_SSD 0.57 43.0 2.95e-01 81.7% 79.6%
5056414 11.18.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › N-terminal domain in metallo-endopeptidase BACOVA_00663 › N-terminal domain in metallo-endopeptidase BACOVA_00663 0.57 41.0 3.26e-01 76.7% 75.4%
1166366 278.1.1.0 a+b complex topology › Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain › Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain › Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 0.57 40.0 3.51e-01 76.7% 51.5%
4944328 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 39.0 2.99e-01 73.3% 59.2%
4187379 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 38.0 3.02e-01 71.7% 71.7%
3788140 10.32.1.4 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.55 39.0 3.04e-01 76.7% 36.6%
3215570 223.2.1.12 a+b three layers › Profilin-like › profilin-like › profilin-like › MAPKK1_Int 0.55 39.0 3.07e-01 73.3% 65.8%
3902080 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 38.0 3.28e-01 73.3% 52.0%
3502158 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.55 41.0 3.14e-01 81.7% 43.2%
4340143 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.55 38.0 3.71e-01 75.0% 68.1%
3713297 10.32.1.4 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.55 39.0 3.33e-01 76.7% 44.8%
3480786 10.32.1.4 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.55 39.0 2.95e-01 76.7% 30.0%
3927766 223.2.1.3 a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s 0.55 38.0 2.88e-01 73.3% 48.3%
4323826 10.4.1.0 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.55 38.0 3.14e-01 73.3% 73.6%
4964967 102.2.1.3 alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N 0.55 44.0 3.57e-01 100.0% 44.3%
3566162 11.1.1.375 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › A2M,MG2,A2M_BRD 0.54 40.0 2.31e-01 80.0% 24.6%
3492395 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 38.0 3.30e-01 73.3% 88.9%
3602023 10.32.1.4 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.54 38.0 3.24e-01 76.7% 45.5%
1098285 223.6.1.1 a+b three layers › Profilin-like › GlcG-like › GlcG-like › HbpS-like 0.54 39.0 3.07e-01 80.0% 68.5%
3699801 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 38.0 2.84e-01 73.3% 70.0%
5078826 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 39.0 3.01e-01 78.3% 73.6%
4139591 223.2.1.32 a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_2 0.53 37.0 2.74e-01 73.3% 60.6%
3924594 10.32.1.4 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.53 37.0 3.32e-01 76.7% 50.5%
3476163 11.1.1.31 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG2 0.53 37.0 3.26e-01 76.7% 57.0%
5016233 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 37.0 3.07e-01 71.7% 69.4%
3167797 223.5.1.1 a+b three layers › Profilin-like › YNR034W-A-like › YNR034W-A-like › YNR034W-A-like 0.53 37.0 3.51e-01 73.3% 94.3%
5053333 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 36.0 2.78e-01 71.7% 64.4%
3705571 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 39.0 2.94e-01 80.0% 64.1%
3394732 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.52 35.0 3.09e-01 71.7% 87.8%
5076511 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 35.0 2.93e-01 70.0% 61.0%
4979703 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 40.0 3.03e-01 85.0% 75.2%
3783191 223.2.1.9 a+b three layers › Profilin-like › profilin-like › profilin-like › Sedlin_N 0.51 38.0 2.68e-01 81.7% 97.1%
5046979 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 35.0 2.84e-01 71.7% 63.6%
3508716 223.2.1.7 a+b three layers › Profilin-like › profilin-like › profilin-like › SRP-alpha_N 0.51 39.0 3.11e-01 86.7% 97.8%
5049764 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 35.0 2.80e-01 71.7% 66.1%
3593295 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 35.0 2.95e-01 75.0% 82.7%
5045566 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 37.0 3.12e-01 80.0% 86.7%