←Back to structures
NC_048179.1__YP_009821764.1__HOV36_gp49__00049
Bact-VirNC_048179.1__YP_009821764.1__HOV36_gp49__00049
Identity
- Accession:
- NC_048179 ↗
- Kingdom:
- phage
Quality
90.5
mean pLDDT
Taxonomy
TaxID: 2562175
Cluster
View cluster (11 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 6-77
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF23791.2 best | DUF7173 | 46.5 | 5.20e-12 | 100.0% | 48.3% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6vq6H01 | 1.10.287.3240 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.64 | 54.0 | 3.80e-01 | 88.9% | 50.5% |
| 2ql8A00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.64 | 44.0 | 3.43e-01 | 70.8% | 51.4% |
| 3mk7C01 | 6.10.280.130 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 43.0 | 3.97e-01 | 90.3% | 57.4% |
| 3aonA00 | 1.10.287.3240 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.61 | 53.0 | 3.87e-01 | 94.4% | 78.2% |
| 3w3aG00 | 1.10.287.3240 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.59 | 44.0 | 3.18e-01 | 80.6% | 28.1% |
| 1ryp100 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.57 | 40.0 | 2.83e-01 | 73.6% | 93.2% |
| 1i5eA00 | 3.40.50.2020 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 39.0 | 2.84e-01 | 72.2% | 63.5% |
| 4ic1D00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.57 | 37.0 | 2.66e-01 | 77.8% | 23.3% |
| 3viqA00 | 6.10.140.1020 | Special › Helix non-globular › Helix Hairpins › | 0.56 | 50.0 | 4.14e-01 | 98.6% | 74.6% |
| 1cx8A01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.55 | 41.0 | 2.62e-01 | 77.8% | 62.2% |
| 4ivkA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.54 | 38.0 | 2.40e-01 | 73.6% | 39.9% |
| 2retA00 | 3.30.1300.30 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like | 0.53 | 40.0 | 3.82e-01 | 79.2% | 96.4% |
| 2pn2A00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.53 | 39.0 | 3.22e-01 | 80.6% | 73.7% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4961983 | 3755.1.1.32 ↗ | alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related › ATP-synt_D | 0.79 | 55.0 | 3.75e-01 | 83.3% | 22.6% |
| 5037750 | 3926.1.1.1 ↗ | alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D | 0.79 | 55.0 | 3.91e-01 | 81.9% | 26.7% |
| 4090678 | 3926.1.1.1 ↗ | alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D | 0.79 | 55.0 | 3.81e-01 | 83.3% | 24.2% |
| 5056727 | 3926.1.1.1 ↗ | alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D | 0.79 | 55.0 | 3.85e-01 | 83.3% | 25.4% |
| 4937624 | 3755.1.1.32 ↗ | alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related › ATP-synt_D | 0.79 | 55.0 | 4.01e-01 | 83.3% | 29.7% |
| 4382259 | 3926.1.1.1 ↗ | alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D | 0.78 | 55.0 | 3.89e-01 | 83.3% | 26.5% |
| 5026457 | 3926.1.1.1 ↗ | alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D | 0.78 | 54.0 | 3.78e-01 | 83.3% | 25.0% |
| 3712081 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.73 | 57.0 | 4.81e-01 | 80.6% | 69.1% |
| 3228583 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.73 | 56.0 | 4.62e-01 | 79.2% | 64.3% |
| 3593339 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.72 | 55.0 | 4.62e-01 | 80.6% | 66.1% |
| 4017372 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.69 | 53.0 | 4.45e-01 | 80.6% | 65.2% |
| 3413217 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.69 | 57.0 | 4.71e-01 | 86.1% | 71.3% |
| 5027304 | 3926.1.1.1 ↗ | alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D | 0.68 | 54.0 | 4.01e-01 | 84.7% | 50.9% |
| 3381794 | 207.1.1.57 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1,LRRNT_2,LRR_4,LRR_6,LRR_8 | 0.68 | 50.0 | 2.75e-01 | 77.8% | 5.6% |
| 4037650 | 161.1.1.0 ↗ | alpha complex topology › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.65 | 54.0 | 3.07e-01 | 90.3% | 30.1% |
| 3550136 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.65 | 53.0 | 4.51e-01 | 90.3% | 55.7% |
| 3935332 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.65 | 57.0 | 4.57e-01 | 93.1% | 60.8% |
| 3684538 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.64 | 48.0 | 3.66e-01 | 83.3% | 35.6% |
| 5000798 | 3926.1.1.1 ↗ | alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D | 0.63 | 54.0 | 3.89e-01 | 90.3% | 71.4% |
| 3353299 | 7573.1.1.4 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › UPRTase | 0.62 | 43.0 | 3.06e-01 | 72.2% | 63.6% |
| 4666185 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.62 | 47.0 | 2.94e-01 | 81.9% | 20.5% |
| 5078639 | 3926.1.1.1 ↗ | alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D | 0.60 | 51.0 | 3.62e-01 | 88.9% | 60.0% |
| 4941817 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.59 | 42.0 | 3.62e-01 | 73.6% | 87.2% |
| 3627479 | 221.1.1.4 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 | 0.57 | 43.0 | 3.58e-01 | 80.6% | 87.2% |
| 222168 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.57 | 37.0 | 2.66e-01 | 77.8% | 23.3% |
| 3844249 | 2004.1.1.47 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › G-alpha | 0.57 | 51.0 | 3.34e-01 | 94.4% | 95.8% |
| 4322773 | 2004.1.1.431 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf, G-alpha | 0.57 | 49.0 | 3.23e-01 | 93.1% | 99.3% |
| 3276185 | 2004.1.1.47 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › G-alpha | 0.55 | 47.0 | 3.21e-01 | 91.7% | 39.6% |
| 4803436 | 4300.1.1.15 ↗ | beta complex topology › Viral glycoprotein ectodomain-like › Viral glycoprotein ectodomain-like › Viral glycoprotein ectodomain-like › Rhabdo_glycop_CD | 0.55 | 44.0 | 4.29e-01 | 87.5% | 81.2% |
| 4955493 | 1075.1.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain | 0.54 | 47.0 | 3.22e-01 | 95.8% | 30.6% |
| 5032062 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.54 | 47.0 | 3.57e-01 | 100.0% | 42.8% |
| 3168821 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.53 | 42.0 | 2.84e-01 | 90.3% | 67.5% |
| 3179796 | 4291.1.1.1 ↗ | beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP | 0.52 | 43.0 | 2.67e-01 | 90.3% | 87.9% |
| 3598902 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.51 | 45.0 | 2.82e-01 | 95.8% | 51.8% |
| 3484326 | 7579.1.1.0 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases | 0.51 | 41.0 | 2.75e-01 | 90.3% | 74.3% |
D2
medium
residues 85-129
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF23791.2 best | DUF7173 | 51.5 | 1.50e-13 | 100.0% | 32.0% |