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NC_048182.1__YP_009821921.1__HOV39_gp021__00021

Bact-Vir

NC_048182.1__YP_009821921.1__HOV39_gp021__00021

Identity

Accession:
NC_048182 ↗
Kingdom:
phage

Quality

91.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-75
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2r01A02 2.20.180.10 Mainly Beta › Single Sheet › putative fmn-dependent nitroreductase like fold › putative fmn-dependent nitroreductase like domains 0.70 29.0 3.71e-01 91.4% 64.3%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 48.0 5.43e-01 88.6% 100.0%
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 47.0 5.33e-01 91.4% 100.0%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 51.0 5.54e-01 90.0% 100.0%
1sf9A02 2.30.30.340 Mainly Beta › Roll › SH3 type barrels. › Hypothetical protein YfhH like domains 0.67 47.0 5.22e-01 98.6% 96.3%
1ts9A00 2.30.30.210 Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 0.66 55.0 4.95e-01 100.0% 66.3%
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 49.0 4.89e-01 87.1% 77.5%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.66 45.0 5.03e-01 91.4% 100.0%
7razA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 47.0 4.43e-01 95.7% 63.5%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 49.0 4.95e-01 97.1% 82.6%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.64 44.0 4.91e-01 94.3% 100.0%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 46.0 5.03e-01 98.6% 96.4%
2jxbA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 48.0 4.47e-01 91.4% 66.3%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 48.0 4.91e-01 85.7% 98.5%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.61 40.0 4.43e-01 94.3% 90.4%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 49.0 5.09e-01 90.0% 95.3%
3ceyB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 52.0 4.20e-01 98.6% 80.1%
1wjqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 47.0 4.57e-01 98.6% 78.2%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.60 41.0 4.67e-01 88.6% 100.0%
4nfwF00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.59 49.0 3.84e-01 91.4% 52.3%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 45.0 3.88e-01 85.7% 52.9%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 41.0 4.27e-01 97.1% 81.2%
2ew0A00 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.58 48.0 3.72e-01 95.7% 94.9%
1wjrA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 49.0 4.14e-01 98.6% 85.0%
4n4iA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 46.0 4.25e-01 85.7% 88.9%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 50.0 4.58e-01 100.0% 91.7%
1g8lA04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.57 32.0 3.22e-01 98.6% 50.0%
2gs5A01 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.57 48.0 3.59e-01 95.7% 91.5%
6ixyA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 46.0 3.74e-01 90.0% 97.1%
2m9uA00 2.30.30.850 Mainly Beta › Roll › SH3 type barrels. › 0.56 48.0 4.47e-01 97.1% 91.0%
4mpoB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.56 47.0 3.69e-01 92.9% 62.2%
1b3qB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 37.0 3.79e-01 70.0% 98.5%
3feoB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 47.0 4.47e-01 98.6% 92.8%
3exmA01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.55 46.0 3.41e-01 97.1% 63.1%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 39.0 3.49e-01 78.6% 99.1%
2rghA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 42.0 2.96e-01 88.6% 79.1%
4fdyA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.54 43.0 3.54e-01 92.9% 47.0%
2vobB02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.53 44.0 3.18e-01 94.3% 40.7%
3k8uA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.52 42.0 3.55e-01 94.3% 51.1%
2a8pA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.52 42.0 3.22e-01 97.1% 52.1%
1q1uA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 39.0 3.28e-01 87.1% 97.8%
3tssA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 43.0 4.36e-01 100.0% 94.4%
1a1rA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 36.0 3.46e-01 77.1% 94.1%
3h3hB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 44.0 3.73e-01 100.0% 90.8%
ECOD (74)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3486495 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 51.0 3.82e-01 97.1% 31.4%
3989139 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.69 49.0 5.06e-01 98.6% 80.0%
3598285 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 55.0 5.51e-01 85.7% 97.1%
4321173 4.1.1.98 beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.69 48.0 5.16e-01 98.6% 87.9%
3456496 4.1.1.75 beta barrels › SH3 › SH3 › SH3 › NdhS 0.69 55.0 4.65e-01 90.0% 53.0%
4929307 4.6.1.0 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.68 53.0 5.10e-01 98.6% 73.8%
4367301 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 49.0 5.38e-01 88.6% 96.4%
4952854 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.68 50.0 5.21e-01 97.1% 84.6%
4172306 4.7.1.1 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.68 56.0 5.06e-01 97.1% 67.4%
3476178 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 57.0 4.84e-01 95.7% 91.7%
4947175 4.7.1.0 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.68 56.0 5.15e-01 98.6% 71.1%
4505797 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.67 54.0 5.54e-01 91.4% 96.9%
5046193 4.7.1.1 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.67 55.0 5.12e-01 100.0% 72.2%
5065841 4.7.1.0 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.66 55.0 5.27e-01 100.0% 78.6%
4184660 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 56.0 4.63e-01 97.1% 94.6%
3518287 4.1.1.347 beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.66 54.0 4.66e-01 92.9% 97.4%
4668815 4.7.1.1 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.65 55.0 5.06e-01 100.0% 70.5%
4977702 4.7.1.1 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.65 55.0 5.17e-01 98.6% 77.6%
3414063 4.1.1.233 beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.65 48.0 5.30e-01 92.9% 100.0%
3928136 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 52.0 5.51e-01 98.6% 100.0%
3264883 4.1.1.304 beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.65 48.0 5.19e-01 82.9% 100.0%
3240406 4.1.1.347 beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.65 55.0 4.72e-01 95.7% 92.2%
3302829 4.1.1.237 beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.65 51.0 5.29e-01 85.7% 95.4%
4342110 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.65 52.0 5.22e-01 91.4% 87.7%
3817476 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.65 44.0 4.94e-01 94.3% 98.0%
3296865 4.1.1.237 beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.65 54.0 4.70e-01 91.4% 62.9%
4660084 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.64 52.0 5.22e-01 90.0% 92.8%
4933205 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.64 51.0 4.71e-01 87.1% 87.8%
3708055 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.64 48.0 4.99e-01 100.0% 87.7%
3358753 4.1.1.381 beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5, KOW4_SPT5 0.64 53.0 4.04e-01 91.4% 39.4%
4476045 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.64 51.0 5.15e-01 90.0% 94.3%
4527355 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.64 51.0 5.17e-01 90.0% 92.8%
4200330 4.1.1.249 beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 0.64 55.0 4.57e-01 97.1% 80.0%
3342814 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.64 51.0 4.66e-01 88.6% 87.4%
3834112 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.64 49.0 4.74e-01 84.3% 100.0%
4927654 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 50.0 5.17e-01 87.1% 98.5%
4068333 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.63 50.0 5.14e-01 95.7% 93.8%
4214438 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.63 50.0 5.15e-01 88.6% 98.5%
3616007 4.1.1.233 beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.63 46.0 5.08e-01 98.6% 100.0%
3703933 4.1.1.237 beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.63 53.0 5.48e-01 97.1% 100.0%
4429329 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.63 49.0 5.05e-01 97.1% 93.8%
3627859 4.1.1.237 beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.62 49.0 4.81e-01 85.7% 92.0%
5033600 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 41.0 4.70e-01 72.9% 98.0%
4252954 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.61 48.0 4.88e-01 88.6% 92.9%
3662319 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.61 51.0 4.91e-01 92.9% 88.7%
4101587 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.61 52.0 4.55e-01 94.3% 94.3%
3398496 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.61 45.0 4.88e-01 85.7% 100.0%
4932493 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 45.0 4.63e-01 85.7% 86.2%
3704356 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 48.0 4.60e-01 92.9% 75.0%
3709279 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 51.0 4.72e-01 92.9% 82.2%
4572937 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.61 52.0 4.00e-01 98.6% 69.4%
4030603 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 49.0 4.95e-01 97.1% 91.2%
1746358 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 52.0 4.49e-01 95.7% 94.4%
3852545 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 46.0 4.85e-01 85.7% 95.0%
4302032 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.60 47.0 4.85e-01 88.6% 98.5%
3850131 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.60 51.0 4.81e-01 94.3% 92.9%
3619619 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 48.0 4.81e-01 85.7% 87.1%
3357709 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.60 48.0 4.52e-01 88.6% 89.4%
3967347 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.60 50.0 4.91e-01 92.9% 93.3%
4491893 4.1.1.7 beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.60 52.0 4.63e-01 98.6% 77.7%
3466299 6.1.1.0 beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.60 49.0 4.05e-01 94.3% 99.3%
3603357 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 43.0 4.69e-01 91.4% 100.0%
3181766 4.1.1.237 beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.59 50.0 4.95e-01 95.7% 89.3%
3924375 4.1.1.237 beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.58 52.0 5.11e-01 100.0% 96.0%
3554026 4.1.1.233 beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.58 44.0 4.71e-01 85.7% 100.0%
4679625 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 41.0 4.37e-01 78.6% 90.0%
4210485 4.1.1.303 beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.57 45.0 4.67e-01 94.3% 95.4%
3240407 4.1.1.237 beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.57 50.0 5.03e-01 98.6% 97.1%
3313139 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.57 50.0 3.77e-01 100.0% 84.0%
3553983 4.1.1.233 beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.57 44.0 4.62e-01 87.1% 100.0%
3905176 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.56 46.0 4.70e-01 92.9% 100.0%
3645395 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.56 48.0 4.65e-01 97.1% 98.8%
3696482 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 44.0 4.13e-01 97.1% 70.8%
3925426 220.1.1.176 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7778 0.53 44.0 3.68e-01 98.6% 60.0%