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NC_048182.1__YP_009821964.1__HOV39_gp064__00064
Bact-VirNC_048182.1__YP_009821964.1__HOV39_gp064__00064
Identity
- Accession:
- NC_048182 ↗
- Kingdom:
- phage
Quality
71.4
mean pLDDT
Taxonomy
TaxID: 2562142
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 17-146_407-461
Domain cluster:
rep: NC_043027.1__YP_009664502.1__FK780_gp146__00300__D13-149_341-404
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4g6vB00 | 3.30.70.2920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 29.0 | 3.73e-01 | 88.6% | 77.7% |
| 5wvoC02 | 1.10.10.2230 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.57 | 20.0 | 2.78e-01 | 94.1% | 60.2% |
| 5wpjA02 | 3.30.70.420 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain | 0.57 | 28.0 | 3.50e-01 | 94.1% | 76.9% |
| 2hhiA01 | 3.30.565.40 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like | 0.55 | 27.0 | 3.29e-01 | 87.0% | 71.2% |
| 3tekA00 | 3.30.470.50 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › | 0.54 | 32.0 | 3.59e-01 | 95.7% | 76.3% |
| 2jxpA01 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.52 | 36.0 | 4.06e-01 | 78.9% | 92.2% |
| 1zs7A01 | 3.10.450.120 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 | 0.51 | 30.0 | 3.82e-01 | 84.9% | 100.0% |
| 1vqqA01 | 3.10.450.100 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › NTF2-like; domain 1 | 0.51 | 31.0 | 3.81e-01 | 87.0% | 100.0% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4071970 | 4010.1.1.3 ↗ | a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_3 | 0.72 | 65.0 | 5.89e-01 | 99.5% | 71.8% |
| 4585275 | 4010.1.1.2 ↗ | a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 0.71 | 66.0 | 5.62e-01 | 99.5% | 68.6% |
| 4310350 | 4010.1.1.2 ↗ | a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 | 0.71 | 65.0 | 5.68e-01 | 99.5% | 67.9% |
| 146240 | 4010.1.1.1 ↗ | a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_1 | 0.71 | 66.0 | 6.59e-01 | 97.8% | 98.4% |
| 4241291 | 4010.1.1.3 ↗ | a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_3 | 0.70 | 65.0 | 5.81e-01 | 99.5% | 74.1% |
| 3970758 | 222.1.1.0 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase | 0.56 | 25.0 | 3.04e-01 | 93.5% | 60.8% |
| 3459363 | 243.3.1.74 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF1668 | 0.54 | 24.0 | 3.37e-01 | 76.8% | 87.1% |
| 3769924 | 243.1.1.12 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TIM21 | 0.52 | 33.0 | 3.85e-01 | 96.8% | 88.5% |
| 4020948 | 611.9.1.0 ↗ | alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain | 0.51 | 28.0 | 3.54e-01 | 85.9% | 86.1% |
| 3936956 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.51 | 30.0 | 3.70e-01 | 87.6% | 93.6% |
| 3836869 | 243.1.1.12 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TIM21 | 0.51 | 32.0 | 3.84e-01 | 94.1% | 94.2% |
D2
medium
residues 147-165_188-228_357-406
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1k8iA01 | 3.10.320.10 | Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 | 0.51 | 29.0 | 3.32e-01 | 92.7% | 76.6% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3656434 | 4.2.1.0 ↗ | beta barrels › SH3 › SAND › SAND | 0.51 | 32.0 | 3.83e-01 | 81.8% | 100.0% |
| 3334232 | 4.2.1.4 ↗ | beta barrels › SH3 › SAND › SAND › TDBD | 0.51 | 32.0 | 3.80e-01 | 84.5% | 100.0% |
| 3432251 | 4.2.1.1 ↗ | beta barrels › SH3 › SAND › SAND › SAND | 0.50 | 31.0 | 3.71e-01 | 81.8% | 97.1% |
D3
medium
residues 504-558