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NC_048183.1__YP_009822221.1__HOV40_gp38__00037

Bact-Vir

Identity

Accession:: NC_048183 ↗
Kingdom:: phage

Quality

82.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Poseidonvirus› Synechococcus_phage_S-CBP4

TaxID: 754059

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-81

PDB

Domain cluster: rep: MW269554.1__QPZ53268.1__AchV4_0031__00031__D21-91

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF11753.14 best	DUF3310	51.4	1.30e-13	71.8%	91.7%

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4i4cB00	3.40.50.1820	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain	0.65	48.0	2.99e-01	77.5%	59.3%
2di3B02	1.20.120.530	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like	0.65	52.0	4.12e-01	90.1%	73.5%
2w9mA02	1.10.150.20	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain	0.65	39.0	4.02e-01	70.4%	63.2%
4d0nB01	1.20.900.10	Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain	0.63	54.0	3.65e-01	93.0%	83.7%
3u5nA02	1.20.920.10	Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like	0.59	47.0	4.06e-01	91.5%	70.8%
2ou3A01	1.10.3680.10	Mainly Alpha › Orthogonal Bundle › TerB-like › TerB-like	0.58	47.0	3.77e-01	93.0%	77.3%
2mabA00	1.10.10.1350	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain	0.57	39.0	3.43e-01	71.8%	63.3%
2ix5A01	1.10.540.10	Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain	0.56	43.0	3.56e-01	85.9%	82.8%
1vb3A01	3.90.1380.10	Alpha Beta › Alpha-Beta Complex › threonine synthase, domain 1, chain A › Threonine synthase, N-terminal domain	0.55	36.0	3.51e-01	78.9%	59.3%
3ebbA00	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.54	44.0	2.97e-01	88.7%	90.9%
5yjlB01	3.30.460.30	Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Glutamyl-tRNA reductase, N-terminal domain	0.54	42.0	3.27e-01	85.9%	82.0%
2dfkC01	1.20.900.10	Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain	0.52	45.0	3.26e-01	98.6%	92.9%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3970007	3502.1.1.0 ↗	alpha bundles › uncharacterized conserved protein › uncharacterized conserved protein › uncharacterized conserved protein	0.67	38.0	3.71e-01	87.3%	53.3%
4993969	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.66	48.0	4.54e-01	76.1%	100.0%
3463135	3782.1.1.0 ↗	a+b duplicates or obligate multimers › Envelope glycoprotein GP2-related › Envelope glycoprotein GP2-related › Envelope glycoprotein GP2-related	0.60	41.0	4.26e-01	77.5%	76.9%
3809923	327.11.2.3 ↗	a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_6	0.59	42.0	4.03e-01	76.1%	87.1%
4025737	314.1.1.6 ↗	a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB	0.57	40.0	2.79e-01	74.6%	48.1%
3276589	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.56	41.0	2.71e-01	80.3%	16.1%