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NC_048190.1__YP_009823059.1__HOV47_gp046__00046

Bact-Vir

NC_048190.1__YP_009823059.1__HOV47_gp046__00046

Identity

Accession:
NC_048190 ↗
Kingdom:
phage

Quality

74.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Barbavirus› Rheinheimera_phage_vB_RspM_Barba19A

TaxID: 2565658

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-90
PDB
Domain cluster: rep: KX507046.1__AOQ26777.1__X__00052__D9-78
D2 high residues 104-168
PDB
Domain cluster: representative
CATH (58)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2dfkC02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.76 52.0 3.97e-01 70.8% 39.7%
1u5dA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.75 51.0 4.30e-01 70.8% 48.1%
3tu3B01 3.30.720.80 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.75 52.0 4.95e-01 73.8% 61.8%
5d3xB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.75 51.0 3.92e-01 70.8% 41.1%
1kz7C02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.73 50.0 3.87e-01 70.8% 35.0%
1atiB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.73 55.0 4.60e-01 81.5% 75.9%
1adjB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.72 53.0 4.69e-01 78.5% 77.7%
2dtcA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.69 47.0 3.91e-01 70.8% 43.1%
2jxwA00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.68 36.0 3.48e-01 70.8% 42.7%
3pg7A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 45.0 3.84e-01 70.8% 43.6%
1g5hB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.67 60.0 5.06e-01 100.0% 82.2%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.67 48.0 5.05e-01 87.7% 87.7%
2q5iA03 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.66 57.0 4.64e-01 95.4% 66.9%
2ysiA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.65 35.0 4.28e-01 73.8% 100.0%
1httA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.65 53.0 4.66e-01 90.8% 79.6%
3le4A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.64 40.0 4.20e-01 89.2% 72.7%
8ouzD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 46.0 3.18e-01 76.9% 85.6%
3icsA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.63 44.0 3.15e-01 72.3% 55.4%
1i3zA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.62 51.0 4.47e-01 93.8% 94.2%
1d4tA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.62 51.0 4.43e-01 93.8% 94.2%
1nj1A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.62 52.0 4.49e-01 93.8% 76.9%
5e3iA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.62 50.0 4.37e-01 89.2% 76.8%
2d9xA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 51.0 4.29e-01 92.3% 99.1%
3rm5B01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.61 46.0 2.99e-01 81.5% 66.8%
4govA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.61 42.0 3.46e-01 75.4% 92.4%
4wi1A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.60 53.0 4.34e-01 100.0% 69.1%
6nhiA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.60 45.0 4.14e-01 80.0% 82.1%
2lezA00 3.30.2450.10 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 0.59 43.0 3.52e-01 76.9% 73.3%
1jlxA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.59 41.0 3.29e-01 75.4% 95.7%
1f8wA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 42.0 3.14e-01 75.4% 47.9%
2jrbA00 3.30.250.20 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › L1 transposable element, C-terminal domain 0.58 47.0 4.74e-01 96.9% 92.3%
1zymA01 3.50.30.10 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Phosphohistidine domain 0.57 39.0 3.22e-01 70.8% 95.0%
4g59B00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.57 40.0 3.08e-01 75.4% 49.1%
3f42A00 3.30.1310.10 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › Nucleoid-associated protein YbaB-like domain 0.57 39.0 3.42e-01 80.0% 49.5%
4bs9A01 3.90.930.60 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.57 42.0 3.73e-01 80.0% 96.8%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 47.0 3.90e-01 96.9% 91.1%
6fcvB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 40.0 2.51e-01 75.4% 92.6%
2rbcA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.56 48.0 3.16e-01 100.0% 82.7%
2vnuD04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 44.0 4.20e-01 89.2% 89.9%
3hj4A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.56 38.0 3.09e-01 72.3% 70.2%
1e8oD00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.55 37.0 3.62e-01 70.8% 61.8%
3rauA00 1.25.40.280 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › alix/aip1 like domains 0.55 48.0 3.02e-01 100.0% 29.6%
5wbyC01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 43.0 2.76e-01 84.6% 91.4%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.55 37.0 4.03e-01 72.3% 96.2%
3m2oA01 3.30.720.120 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.54 35.0 3.78e-01 78.5% 81.1%
5ic7A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 43.0 2.78e-01 90.8% 96.8%
4f9zA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 43.0 3.77e-01 90.8% 65.0%
5xbfA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 36.0 3.32e-01 70.8% 75.0%
5yy8A00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.53 43.0 2.98e-01 96.9% 85.3%
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 40.0 4.34e-01 86.2% 100.0%
3hdoA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 45.0 3.69e-01 100.0% 66.2%
4gouA02 2.30.29.200 Mainly Beta › Roll › PH-domain like › 0.53 43.0 3.24e-01 89.2% 98.1%
3getA02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 42.0 3.83e-01 95.4% 90.4%
2e8eA00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.52 36.0 2.96e-01 73.8% 37.9%
3p8aA02 2.60.40.4320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 37.0 3.37e-01 80.0% 55.6%
1efzA00 3.20.20.105 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Queuine tRNA-ribosyltransferase-like 0.51 43.0 2.73e-01 98.5% 83.1%
4pmwA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 38.0 3.55e-01 87.7% 91.2%
2vpjA00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.50 40.0 2.76e-01 96.9% 96.5%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3987799 4221.1.1.1 ↗ a+b two layers › YkuJ-like › YkuJ-like › YkuJ-like › DUF1797 0.77 61.0 5.93e-01 83.1% 100.0%
3513850 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.77 52.0 4.55e-01 70.8% 48.4%
4931821 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.76 62.0 5.25e-01 87.7% 76.7%
978 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.75 52.0 3.98e-01 72.3% 34.1%
3174481 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.75 51.0 3.75e-01 70.8% 36.9%
4886650 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.75 53.0 4.80e-01 73.8% 75.3%
4536182 220.1.1.93 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_6 0.74 48.0 3.62e-01 70.8% 28.4%
4947834 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.73 49.0 4.14e-01 70.8% 42.9%
4494810 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.73 57.0 5.25e-01 81.5% 77.5%
3265019 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.72 48.0 4.11e-01 70.8% 43.7%
4477176 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.72 51.0 4.65e-01 73.8% 77.6%
3706884 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.71 48.0 4.02e-01 70.8% 42.7%
3784979 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 48.0 3.67e-01 70.8% 33.1%
4928233 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.70 48.0 3.79e-01 72.3% 46.4%
3338669 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.69 45.0 4.86e-01 76.9% 80.0%
4971601 241.14.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › SARS-unique domain-C › SARS-unique domain-C 0.68 58.0 5.66e-01 93.8% 100.0%
3271679 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 46.0 3.57e-01 70.8% 37.2%
4927852 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.67 47.0 4.24e-01 73.8% 94.4%
5050109 375.1.1.31 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.67 46.0 4.19e-01 70.8% 68.2%
4028139 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.67 44.0 4.64e-01 76.9% 80.0%
5036669 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.66 49.0 4.28e-01 80.0% 75.0%
4297095 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.66 60.0 5.07e-01 100.0% 79.0%
3307519 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.66 44.0 4.36e-01 72.3% 65.7%
3740597 880.1.1.1 ↗ a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind 0.65 46.0 2.75e-01 73.8% 25.2%
4062573 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.65 50.0 4.37e-01 84.6% 76.0%
4286423 2003.1.7.10 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › Rib_5-P_isom_A 0.64 45.0 3.30e-01 73.8% 87.4%
3241191 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 43.0 3.62e-01 70.8% 40.9%
5032233 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 46.0 3.83e-01 76.9% 78.3%
5011618 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 43.0 3.34e-01 70.8% 67.9%
4316393 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.63 56.0 4.69e-01 100.0% 72.7%
4275104 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.62 55.0 4.57e-01 100.0% 69.6%
3633981 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.61 46.0 2.67e-01 80.0% 58.1%
3561937 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.60 46.0 3.15e-01 83.1% 27.3%
3820988 220.1.1.11 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.59 41.0 3.27e-01 72.3% 39.3%
4958343 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.58 46.0 4.16e-01 86.2% 94.4%
3926998 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.58 44.0 4.16e-01 83.1% 67.5%
3995338 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.58 46.0 3.54e-01 89.2% 61.3%
3953675 330.7.1.0 ↗ a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain 0.57 46.0 4.69e-01 92.3% 98.5%
3597793 5094.1.1.0 ↗ a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like 0.57 42.0 3.45e-01 83.1% 47.4%
3594674 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.57 49.0 3.94e-01 100.0% 65.9%
3476810 5.1.4.175 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_IFT122_2nd 0.56 42.0 2.80e-01 78.5% 45.6%
3687178 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 48.0 2.95e-01 95.4% 88.5%
3448558 880.1.1.1 ↗ a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind 0.55 45.0 2.70e-01 95.4% 73.1%
5015133 4100.1.1.9 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › DUF7387 0.55 40.0 4.21e-01 83.1% 85.0%
3720028 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 38.0 3.31e-01 75.4% 45.2%
4946598 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 46.0 2.99e-01 96.9% 32.4%
4275468 223.1.1.95 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › NtrY_N 0.53 37.0 2.75e-01 73.8% 55.3%
3619889 331.23.1.7 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF73-100_C 0.52 41.0 4.08e-01 87.7% 84.3%
4962256 101.1.2.937 ↗ alpha arrays › HTH › HTH › winged helix domain › PF25943 0.51 41.0 3.56e-01 92.3% 87.3%
5025229 300.1.1.6 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › Regulator_TrmB 0.51 41.0 3.25e-01 87.7% 74.4%
3329380 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.51 42.0 3.50e-01 92.3% 51.3%
3953820 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.51 40.0 2.61e-01 98.5% 89.9%
3403399 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.50 38.0 3.23e-01 83.1% 90.4%