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NC_048191.1__YP_009823168.1__HOV48_gp012__00012
Bact-VirNC_048191.1__YP_009823168.1__HOV48_gp012__00012
Identity
- Accession:
- NC_048191 ↗
- Kingdom:
- phage
Quality
96.3
mean pLDDT
Taxonomy
TaxID: 2849598
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 31-126
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ul4A01 | 4.10.1100.10 | Few Secondary Structures › Irregular › DNA-binding domain of squamosa promoter binding protein-like 12 (lacking the second zinc- binding site) › Transcription factor, SBP-box domain | 0.71 | 28.0 | 3.39e-01 | 70.8% | 52.3% |
| 4uf0A03 | 2.10.110.20 | Mainly Beta › Ribbon › Cysteine Rich Protein › | 0.60 | 31.0 | 3.70e-01 | 90.6% | 72.3% |
| 3goxA02 | 3.30.60.130 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.57 | 25.0 | 3.33e-01 | 75.0% | 74.1% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3356935 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.67 | 34.0 | 3.86e-01 | 71.9% | 62.7% |
| 3523516 | 5063.1.1.11 ↗ | alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › TSTD2_N | 0.61 | 37.0 | 4.19e-01 | 76.0% | 82.9% |
| 5076107 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.50 | 29.0 | 3.25e-01 | 72.9% | 71.2% |
D2
high
residues 141-200
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3zdrA02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.69 | 55.0 | 3.81e-01 | 90.0% | 71.0% |
| 2px0A01 | 1.20.120.1380 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar FlhF biosynthesis protein, N domain | 0.63 | 42.0 | 4.02e-01 | 96.7% | 57.5% |
| 3f2eA00 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 42.0 | 3.81e-01 | 98.3% | 50.6% |
| 3jvoA00 | 1.10.3230.30 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein yqbg › Phage gp6-like head-tail connector protein | 0.62 | 40.0 | 3.43e-01 | 98.3% | 41.7% |
| 2g8lB01 | 1.10.8.380 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 | 0.61 | 41.0 | 4.01e-01 | 100.0% | 62.7% |
| 5cy5B00 | 1.20.1200.10 | Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like | 0.58 | 48.0 | 3.68e-01 | 95.0% | 83.2% |
| 3nbiA01 | 1.10.8.1020 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain | 0.58 | 36.0 | 3.69e-01 | 81.7% | 65.5% |
| 2rjiA00 | 1.10.1740.170 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Erythrocyte binding antigen 175 region VI | 0.58 | 48.0 | 4.40e-01 | 98.3% | 70.2% |
| 7dswA01 | 1.20.1530.20 | Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › | 0.57 | 50.0 | 3.05e-01 | 100.0% | 74.3% |
| 3vkgA15 | 1.10.8.1220 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.57 | 37.0 | 3.26e-01 | 98.3% | 42.6% |
| 2ovbA02 | 1.25.40.460 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.57 | 44.0 | 4.09e-01 | 86.7% | 93.7% |
| 8e9gE01 | 1.10.10.1590 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E | 0.57 | 40.0 | 3.96e-01 | 75.0% | 81.0% |
| 2vvwA00 | 1.10.437.20 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › dsDNA poxvirus | 0.56 | 42.0 | 3.19e-01 | 81.7% | 94.0% |
| 3fbzA01 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 41.0 | 3.45e-01 | 100.0% | 45.1% |
| 1iyhB02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.54 | 40.0 | 3.30e-01 | 78.3% | 93.5% |
| 3eslA01 | 1.20.58.2070 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 35.0 | 3.28e-01 | 100.0% | 54.7% |
| 2i2xB01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.53 | 38.0 | 3.30e-01 | 78.3% | 48.0% |
| 1aepA00 | 1.20.120.20 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein | 0.53 | 44.0 | 3.36e-01 | 98.3% | 91.5% |
| 2yw6B00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.52 | 39.0 | 2.99e-01 | 81.7% | 87.3% |
| 1yhuB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.51 | 40.0 | 3.26e-01 | 96.7% | 90.3% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3507860 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.69 | 49.0 | 4.14e-01 | 100.0% | 43.8% |
| 4513768 | 3949.1.1.0 ↗ | alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain | 0.69 | 55.0 | 5.54e-01 | 96.7% | 90.0% |
| 3707326 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.68 | 60.0 | 4.45e-01 | 100.0% | 39.3% |
| 3740593 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.65 | 40.0 | 2.82e-01 | 98.3% | 20.0% |
| 3599579 | 70.3.1.2 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › zf-MYND | 0.65 | 58.0 | 3.79e-01 | 100.0% | 32.3% |
| 3803972 | 130.1.1.0 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif | 0.64 | 51.0 | 4.87e-01 | 93.3% | 75.7% |
| 3481299 | 1134.1.1.0 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain | 0.64 | 37.0 | 3.64e-01 | 83.3% | 53.8% |
| 3539417 | 109.25.1.6 ↗ | alpha superhelices › Repetitive alpha hairpins › GPCR-autoproteolysis inducing domain subdomain A › GPCR-autoproteolysis inducing domain subdomain A › GAIN_ADGRG2 | 0.59 | 37.0 | 3.77e-01 | 86.7% | 63.3% |
| 3266845 | 633.16.1.0 ↗ | alpha bundles › Bromodomain-like › PMT helical bundle domain-like › PMT helical bundle domain-like | 0.59 | 39.0 | 2.95e-01 | 96.7% | 28.3% |
| 4033427 | 639.2.1.0 ↗ | alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) | 0.58 | 47.0 | 4.52e-01 | 88.3% | 77.1% |
| 4010451 | 3788.1.1.15 ↗ | alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › PF27202 | 0.58 | 43.0 | 4.08e-01 | 93.3% | 66.7% |
| 3986190 | 110.1.1.0 ↗ | alpha arrays › DEATH domain › DEATH domain › DEATH domain | 0.57 | 46.0 | 4.09e-01 | 98.3% | 60.2% |
| 4380838 | 109.4.1.45 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › BTAD | 0.57 | 40.0 | 2.92e-01 | 73.3% | 53.8% |
| 4304666 | 532.1.1.0 ↗ | alpha arrays › Type III secretion system domain-like › Antibiotic binding domain of TipA-like multidrug resistance regulators › Antibiotic binding domain of TipA-like multidrug resistance regulators | 0.57 | 40.0 | 3.34e-01 | 83.3% | 44.0% |
| 3816224 | 101.1.17.2 ↗ | alpha arrays › HTH › HTH › FF domain › FF | 0.56 | 43.0 | 4.10e-01 | 81.7% | 75.7% |
| 3234742 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.56 | 37.0 | 3.35e-01 | 100.0% | 46.7% |
| 3934747 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.55 | 41.0 | 3.99e-01 | 83.3% | 92.9% |
| 4203130 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.54 | 44.0 | 3.57e-01 | 90.0% | 47.0% |
| 4259729 | 3755.3.1.295 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › WWC1 | 0.54 | 38.0 | 2.92e-01 | 100.0% | 33.3% |
| 4943145 | 601.28.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like | 0.54 | 39.0 | 3.55e-01 | 85.0% | 82.1% |
| 3424514 | 606.1.1.0 ↗ | alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain | 0.52 | 40.0 | 3.24e-01 | 85.0% | 63.3% |
| 3901917 | 1134.1.1.7 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain › ALA1 | 0.51 | 40.0 | 3.81e-01 | 83.3% | 84.3% |
| 3684979 | 192.3.1.0 ↗ | alpha bundles › Long alpha-hairpin › Fe,Mn superoxide dismutase (SOD), N-terminal domain › Fe,Mn superoxide dismutase (SOD), N-terminal domain | 0.51 | 41.0 | 3.50e-01 | 90.0% | 55.8% |
| 4019166 | 101.1.9.86 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF7593 | 0.50 | 43.0 | 3.12e-01 | 100.0% | 32.4% |