←Back to structures

NC_048191.1__YP_009823232.1__HOV48_gp076__00076

Bact-Vir

NC_048191.1__YP_009823232.1__HOV48_gp076__00076

Identity

Accession:
NC_048191 ↗
Kingdom:
phage

Quality

89.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Barbavirus› Rheinheimera_phage_Barba21A

TaxID: 2849598

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 34-95
PDB
Domain cluster: rep: MW286268.1__QQO90889.1__X__00022__D15-79
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6qv4A04 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.77 66.0 4.62e-01 96.8% 54.8%
2hqrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 61.0 5.14e-01 96.8% 66.0%
7ewfB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 62.0 5.84e-01 96.8% 88.0%
2ek0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.70 61.0 5.45e-01 100.0% 84.4%
4bujE03 1.10.3380.30 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › 0.68 56.0 3.87e-01 93.5% 67.7%
4i98C01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 54.0 5.17e-01 95.2% 86.7%
3zihA00 3.30.110.150 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › SepF-like protein 0.66 54.0 5.11e-01 100.0% 74.7%
8amzO01 1.25.40.570 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.66 56.0 3.58e-01 100.0% 27.4%
6juvB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 55.0 5.25e-01 100.0% 86.7%
6qpqB00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.65 54.0 5.04e-01 100.0% 88.9%
5xnsC00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.64 53.0 5.18e-01 100.0% 92.9%
8amzP01 1.25.40.570 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.62 51.0 3.23e-01 98.4% 16.0%
4bgdA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 52.0 4.74e-01 100.0% 96.7%
1wi9A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 49.0 5.04e-01 100.0% 96.6%
5dcaA11 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 52.0 4.47e-01 100.0% 83.8%
3f8mA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 51.0 5.10e-01 100.0% 93.8%
3qc1A01 1.25.40.540 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TAP42-like family 0.61 43.0 3.28e-01 74.2% 88.7%
4h0eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 50.0 4.92e-01 100.0% 92.9%
1jyoA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.61 44.0 3.49e-01 77.4% 48.5%
2gqfA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 43.0 2.91e-01 75.8% 46.6%
1c4zA01 3.90.1750.10 Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Hect, E3 ligase catalytic domains 0.60 50.0 3.89e-01 100.0% 80.0%
3zigA00 3.30.110.150 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › SepF-like protein 0.60 51.0 4.76e-01 100.0% 75.6%
3bjoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 43.0 3.78e-01 100.0% 48.5%
3htuA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 51.0 4.87e-01 100.0% 98.7%
2l01A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 49.0 4.69e-01 100.0% 79.2%
3lmmB05 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 49.0 4.95e-01 100.0% 98.4%
4qmfB01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.59 40.0 3.77e-01 74.2% 54.9%
2uyyA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.59 50.0 3.99e-01 93.5% 93.5%
1cf7A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 49.0 4.81e-01 100.0% 91.0%
3ckyA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.59 50.0 3.89e-01 93.5% 75.4%
2l4mA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 47.0 4.59e-01 96.8% 84.1%
3q5wA00 1.20.58.1590 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Tethering factor for nuclear proteasome Cut8/Sts1 0.59 48.0 3.43e-01 93.5% 38.9%
4tv7D01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 48.0 4.46e-01 100.0% 76.5%
3bwgB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 47.0 4.67e-01 100.0% 94.2%
3g0oA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.58 48.0 3.90e-01 93.5% 82.6%
3tu3A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.57 42.0 3.42e-01 79.0% 42.9%
3mwmA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 48.0 4.60e-01 100.0% 85.3%
3clkA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 46.0 3.72e-01 98.4% 56.4%
4pcaB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 47.0 3.34e-01 100.0% 35.8%
2cvzA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.56 46.0 3.67e-01 95.2% 87.9%
1vq8V00 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 39.0 3.94e-01 77.4% 92.3%
3keyA01 1.10.10.1080 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain 0.55 45.0 4.17e-01 100.0% 96.6%
3cuqA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 44.0 4.19e-01 96.8% 73.8%
3cjnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 45.0 3.60e-01 100.0% 46.6%
7nc3F01 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.55 44.0 3.66e-01 90.3% 60.5%
2v6kA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.54 43.0 3.45e-01 90.3% 73.1%
2l02A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 44.0 4.10e-01 100.0% 74.4%
1u5tB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 43.0 4.26e-01 100.0% 98.6%
3h6pC00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.53 37.0 3.90e-01 72.6% 98.2%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3994202 101.1.2.22 ↗ alpha arrays › HTH › HTH › winged helix domain › PCI 0.72 62.0 6.07e-01 100.0% 98.6%
4426232 101.1.2.22 ↗ alpha arrays › HTH › HTH › winged helix domain › PCI 0.71 62.0 5.43e-01 96.8% 87.8%
3685184 101.1.2.22 ↗ alpha arrays › HTH › HTH › winged helix domain › PCI 0.70 60.0 4.95e-01 100.0% 53.0%
3969336 5054.1.1.8 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.68 43.0 3.64e-01 77.4% 40.0%
4264297 101.1.2.760 ↗ alpha arrays › HTH › HTH › winged helix domain › PF30824 0.67 56.0 4.54e-01 100.0% 57.0%
4178005 101.1.2.8 ↗ alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C 0.67 56.0 4.80e-01 96.8% 66.3%
4025539 101.1.2.22 ↗ alpha arrays › HTH › HTH › winged helix domain › PCI 0.66 57.0 5.43e-01 100.0% 86.7%
5006397 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.66 55.0 5.42e-01 100.0% 92.8%
3597916 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 56.0 4.54e-01 100.0% 72.8%
3318546 101.1.2.22 ↗ alpha arrays › HTH › HTH › winged helix domain › PCI 0.65 55.0 4.78e-01 100.0% 61.0%
3615575 101.1.2.22 ↗ alpha arrays › HTH › HTH › winged helix domain › PCI 0.65 55.0 5.36e-01 100.0% 87.1%
4034096 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 56.0 5.18e-01 98.4% 80.0%
3363790 101.1.2.22 ↗ alpha arrays › HTH › HTH › winged helix domain › PCI 0.65 54.0 5.30e-01 100.0% 87.1%
4087344 314.1.1.2 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.65 56.0 3.54e-01 98.4% 72.8%
3735508 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 55.0 4.46e-01 100.0% 48.8%
4998878 101.1.2.22 ↗ alpha arrays › HTH › HTH › winged helix domain › PCI 0.64 53.0 5.12e-01 100.0% 82.9%
3477992 101.1.2.22 ↗ alpha arrays › HTH › HTH › winged helix domain › PCI 0.64 53.0 5.00e-01 100.0% 76.2%
3513842 101.1.2.22 ↗ alpha arrays › HTH › HTH › winged helix domain › PCI 0.64 54.0 5.34e-01 100.0% 95.4%
3262224 101.1.2.22 ↗ alpha arrays › HTH › HTH › winged helix domain › PCI 0.63 53.0 5.14e-01 100.0% 87.1%
3394109 109.4.1.643 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COG2_C 0.63 52.0 3.06e-01 93.5% 17.2%
3512389 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 53.0 5.14e-01 100.0% 97.1%
3487542 101.1.2.65 ↗ alpha arrays › HTH › HTH › winged helix domain › Rad21_Rec8 0.63 53.0 4.45e-01 100.0% 80.9%
5031186 101.1.2.39 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA 0.63 53.0 5.04e-01 100.0% 85.3%
3787643 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 53.0 4.63e-01 98.4% 90.0%
4157268 6102.1.1.1 ↗ alpha arrays › N-terminal domain of segregation and condensation protein A, ScpA › N-terminal domain of segregation and condensation protein A, ScpA › N-terminal domain of segregation and condensation protein A, ScpA › SMC_ScpA 0.63 51.0 3.47e-01 90.3% 42.6%
5078802 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 52.0 5.07e-01 100.0% 94.3%
5044029 101.1.2.39 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA 0.62 51.0 4.77e-01 100.0% 76.2%
4941238 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 51.0 5.00e-01 100.0% 91.4%
5035546 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 53.0 4.83e-01 100.0% 74.1%
4930738 101.1.2.39 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA 0.61 51.0 4.96e-01 100.0% 94.3%
4322135 101.1.2.39 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA 0.61 50.0 4.94e-01 100.0% 97.1%
4927470 101.1.2.39 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA 0.61 51.0 4.89e-01 100.0% 84.0%
4979663 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 51.0 4.78e-01 100.0% 80.0%
6628 241.1.1.3 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › CesT 0.61 44.0 3.49e-01 77.4% 48.5%
5047303 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 47.0 3.82e-01 100.0% 43.2%
3593170 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 51.0 4.87e-01 100.0% 82.7%
4011501 632.2.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.60 41.0 3.29e-01 74.2% 46.2%
3709867 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 47.0 2.98e-01 90.3% 16.1%
5054494 328.4.1.1 ↗ a+b two layers › IF3-like › YhbY-like › YhbY-like › CRS1_YhbY 0.60 47.0 4.58e-01 95.2% 84.0%
None — 0.60 50.0 4.69e-01 100.0% 81.2%
4361419 101.1.2.267 ↗ alpha arrays › HTH › HTH › winged helix domain › Nse4_C 0.60 51.0 4.25e-01 100.0% 57.4%
4934328 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 51.0 4.95e-01 100.0% 91.4%
3237291 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 50.0 4.54e-01 100.0% 77.8%
4984257 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.60 51.0 5.10e-01 100.0% 96.9%
4017089 101.1.2.519 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7791 0.59 48.0 3.92e-01 90.3% 67.5%
4999504 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 51.0 4.14e-01 96.8% 60.8%
4186742 101.1.2.39 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA 0.59 49.0 4.82e-01 100.0% 94.3%
3643155 603.1.1.2 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Not3 0.59 45.0 3.60e-01 80.6% 78.3%
5058139 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 49.0 4.77e-01 100.0% 94.3%
3530824 101.1.2.267 ↗ alpha arrays › HTH › HTH › winged helix domain › Nse4_C 0.59 49.0 4.65e-01 100.0% 82.5%
3506709 101.1.2.267 ↗ alpha arrays › HTH › HTH › winged helix domain › Nse4_C 0.59 50.0 4.25e-01 100.0% 58.2%
4187927 101.1.2.39 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA 0.58 48.0 4.75e-01 100.0% 92.9%
4933315 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 49.0 4.59e-01 100.0% 78.8%
4500875 193.1.1.27 ↗ alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › CCDC93_N 0.58 48.0 3.73e-01 91.9% 48.1%
3998806 101.1.2.267 ↗ alpha arrays › HTH › HTH › winged helix domain › Nse4_C 0.57 49.0 4.75e-01 100.0% 94.3%
5030899 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 50.0 4.84e-01 100.0% 90.0%
5063407 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 47.0 4.63e-01 100.0% 90.0%
3441807 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.57 48.0 4.44e-01 100.0% 85.9%
3707907 320.4.1.3 ↗ a+b two layers › R3H domain-like › PUB domain › PUB domain › PUB 0.57 50.0 4.12e-01 100.0% 61.7%
4975439 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 45.0 4.18e-01 100.0% 67.1%
3390936 101.1.2.267 ↗ alpha arrays › HTH › HTH › winged helix domain › Nse4_C 0.57 47.0 4.10e-01 95.2% 92.0%
3902174 320.4.1.1 ↗ a+b two layers › R3H domain-like › PUB domain › PUB domain › TIMELESS_C 0.57 47.0 4.13e-01 100.0% 63.8%
3699588 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 47.0 4.61e-01 98.4% 85.7%
3992570 193.1.1.27 ↗ alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › CCDC93_N 0.57 47.0 3.71e-01 91.9% 50.0%
4030596 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 47.0 4.35e-01 100.0% 78.8%
4008061 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 47.0 4.48e-01 100.0% 90.7%
3508627 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 44.0 4.31e-01 100.0% 84.3%