←Back to structures

NC_048191.1__YP_009823257.1__HOV48_gp101__00101

Bact-Vir

NC_048191.1__YP_009823257.1__HOV48_gp101__00101

Identity

Accession:
NC_048191 ↗
Kingdom:
phage

Quality

79.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Barbavirus› Rheinheimera_phage_Barba21A

TaxID: 2849598

Cluster

View cluster (47 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 28-110
PDB
Domain cluster: rep: NC_027981.1__YP_009167713.1__APL38_gp06__00006__D10-103
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6xgqb01 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.82 74.0 7.13e-01 97.6% 100.0%
1c5eA00 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.82 74.0 7.12e-01 98.8% 96.8%
2w5eA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.67 40.0 4.28e-01 100.0% 67.6%
2j5uA02 2.40.10.340 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 1 0.59 43.0 4.38e-01 78.3% 81.0%
1elvA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 39.0 3.40e-01 95.2% 46.0%
2ey4D00 2.40.10.230 Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain 0.55 40.0 4.25e-01 78.3% 85.3%
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.55 37.0 3.68e-01 77.1% 65.6%
4dt4A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.54 35.0 3.99e-01 100.0% 94.7%
2w2gB01 3.40.220.30 Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Nsp3, SUD-N subdomain 0.54 44.0 3.86e-01 90.4% 76.4%
1v0fB03 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.51 37.0 3.75e-01 78.3% 83.5%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2640772 70.4.1.1 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD 0.83 75.0 7.06e-01 98.8% 94.0%
2559744 70.4.1.2 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_head_fibr 0.80 54.0 6.41e-01 96.4% 98.3%
4963571 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.72 49.0 5.51e-01 91.6% 89.2%
4930420 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.72 49.0 5.36e-01 94.0% 84.3%
3945288 70.4.1.7 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › XM1_gp53_minor_capsid 0.70 62.0 5.13e-01 97.6% 99.3%
5022524 70.4.1.0 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.70 48.0 5.22e-01 94.0% 84.3%
3513462 70.4.1.8 ↗ beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement 0.68 47.0 5.48e-01 95.2% 100.0%
4964309 1.1.7.20 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.66 39.0 4.18e-01 95.2% 67.6%
5018347 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.65 41.0 3.29e-01 96.4% 33.5%
3907690 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.64 48.0 3.49e-01 100.0% 30.5%
3510405 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.59 44.0 3.28e-01 100.0% 32.2%
4942485 1.1.7.20 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.58 39.0 4.04e-01 95.2% 72.5%
4118631 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.58 34.0 4.19e-01 94.0% 98.0%
4037377 1.1.8.20 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Beta-barrel_CAF17_C 0.55 40.0 3.59e-01 77.1% 82.6%
4975116 70.1.1.0 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like 0.53 46.0 4.69e-01 94.0% 96.2%
4951165 284.4.1.0 ↗ a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.53 34.0 3.94e-01 96.4% 98.2%
3614247 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 41.0 3.63e-01 85.5% 89.6%
3287062 2003.1.10.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain 0.51 46.0 4.51e-01 98.8% 97.8%
4350337 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.51 37.0 3.88e-01 77.1% 84.0%
4602455 70.1.1.1 ↗ beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C 0.51 40.0 4.23e-01 90.4% 100.0%