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NC_048193.1__YP_009823362.1__HOV50_gp06__00006

Bact-Vir

NC_048193.1__YP_009823362.1__HOV50_gp06__00006

Identity

Accession:
NC_048193 ↗
Kingdom:
phage

Quality

88.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Xuquatrovirus› Escherichia_phage_PTXU04

TaxID: 2508206

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-109
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2yadA00 3.30.390.150 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.66 42.0 4.54e-01 82.8% 77.9%
1wv8A00 3.30.2390.10 Alpha Beta › 2-Layer Sandwich › TTHA1013/TTHA0281-like › TTHA1013-like 0.65 41.0 4.55e-01 73.1% 81.7%
1ah5A03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.64 54.0 5.55e-01 96.8% 100.0%
4hbrA00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 39.0 3.44e-01 73.1% 42.1%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.62 43.0 4.82e-01 73.1% 98.6%
3natA01 3.40.50.11250 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Protein of unknown function DUF3013 0.62 51.0 4.40e-01 90.3% 72.8%
5usrA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.61 45.0 4.22e-01 77.4% 82.5%
3aimA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.60 48.0 3.47e-01 88.2% 98.9%
6ci7A01 3.30.160.660 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 45.0 4.18e-01 80.6% 62.3%
3g7qA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.60 46.0 3.89e-01 82.8% 67.9%
2fgtA03 3.30.310.160 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › YycH protein, domain 2 0.58 47.0 4.17e-01 95.7% 60.7%
2codA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 40.0 3.97e-01 72.0% 74.0%
4fh3A02 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.57 44.0 3.97e-01 81.7% 84.8%
1oypA01 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.57 40.0 3.14e-01 91.4% 32.7%
4iapA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 40.0 4.09e-01 75.3% 78.3%
4zrlA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.54 41.0 3.87e-01 81.7% 93.2%
2ihmB03 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.54 42.0 3.95e-01 83.9% 99.1%
7xinA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 40.0 3.87e-01 83.9% 92.7%
3s8mA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 45.0 3.04e-01 96.8% 79.2%
2b4vA02 3.30.460.50 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.53 39.0 3.63e-01 79.6% 100.0%
2obdA02 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.53 46.0 3.71e-01 100.0% 74.1%
1l7aA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 37.0 2.65e-01 82.8% 22.0%
2nlvA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.52 36.0 3.45e-01 73.1% 61.6%
4q6rA02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 40.0 3.66e-01 87.1% 74.0%
1u08A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 42.0 3.66e-01 89.2% 69.0%
2ogqA01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.52 38.0 3.44e-01 77.4% 86.5%
4ddpA00 1.10.418.40 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Autophagy protein 6/Beclin 1 0.51 42.0 3.34e-01 90.3% 72.8%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3785991 241.15.1.3 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 0.70 55.0 5.37e-01 86.0% 95.2%
4163583 330.4.1.0 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 0.69 55.0 5.85e-01 90.3% 100.0%
2698437 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.68 56.0 4.88e-01 91.4% 79.9%
4409039 2008.1.1.207 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_7 0.66 52.0 3.94e-01 83.9% 94.1%
4132764 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.65 54.0 5.65e-01 93.5% 100.0%
4024649 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.64 55.0 5.62e-01 97.8% 98.9%
4444908 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.63 48.0 3.51e-01 79.6% 70.6%
4434012 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.62 49.0 5.12e-01 86.0% 97.6%
4983870 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.61 45.0 4.50e-01 77.4% 85.3%
4061397 223.3.1.3 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase 0.61 44.0 3.25e-01 76.3% 29.3%
3787609 5.1.4.219 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DPPIV_N 0.61 46.0 2.91e-01 80.6% 29.4%
3213868 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 44.0 3.89e-01 76.3% 71.1%
4972398 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 43.0 3.55e-01 73.1% 90.0%
4950698 2004.1.1.211 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CLP1_P 0.60 41.0 3.26e-01 71.0% 62.1%
1179234 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.59 47.0 4.46e-01 88.2% 96.6%
3975793 4312.1.1.5 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › RelE 0.57 39.0 3.94e-01 91.4% 69.5%
3477358 220.1.1.37 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_13 0.57 40.0 3.32e-01 72.0% 57.0%
3236943 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.56 43.0 4.17e-01 83.9% 100.0%
3446884 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 36.0 4.09e-01 77.4% 87.1%
3938027 316.1.1.36 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central 0.56 45.0 3.92e-01 84.9% 76.3%
4026008 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.55 43.0 4.48e-01 86.0% 91.8%
4994522 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.55 29.0 2.48e-01 79.6% 29.4%
4287898 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.54 43.0 3.92e-01 86.0% 80.0%
3698882 633.23.1.23 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Amastin 0.54 38.0 2.99e-01 73.1% 69.2%
143323 7579.1.1.27 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › AXE1 0.53 37.0 2.64e-01 79.6% 21.5%
168173 4276.1.1.1 ↗ a+b two layers › XisI-like › XisI-like › XisI-like › XisI 0.53 36.0 3.49e-01 73.1% 60.6%
3291629 245.2.1.0 ↗ a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB 0.52 38.0 3.66e-01 77.4% 90.5%
3956336 245.2.1.0 ↗ a+b two layers › Ribonuclease PH domain 2-like › YbaB › YbaB 0.52 39.0 3.62e-01 81.7% 91.7%
3993117 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.51 40.0 3.94e-01 87.1% 100.0%
4978329 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.51 36.0 3.77e-01 84.9% 83.1%
3604410 2004.1.1.293 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 0.51 42.0 3.42e-01 91.4% 58.9%