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NC_048193.1__YP_009823388.1__HOV50_gp32__00032

Bact-Vir

NC_048193.1__YP_009823388.1__HOV50_gp32__00032

Identity

Accession:
NC_048193 ↗
Kingdom:
phage

Quality

63.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Xuquatrovirus› Escherichia_phage_PTXU04

TaxID: 2508206

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 105-170
PDB
Domain cluster: rep: MW269554.1__QPZ53268.1__AchV4_0031__00031__D21-91
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF11753.14 best DUF3310 27.6 3.50e-06 80.3% 88.3%
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qf9A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.75 61.0 4.54e-01 87.9% 94.2%
4n1yB00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.71 63.0 4.33e-01 100.0% 59.0%
2z0qA01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.66 55.0 3.86e-01 89.4% 89.1%
6a3kA00 1.20.120.10 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 0.64 48.0 3.94e-01 83.3% 72.9%
1tjlA00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.63 51.0 3.96e-01 87.9% 71.0%
3lgdA00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.62 54.0 3.23e-01 98.5% 82.6%
1f68A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.62 52.0 4.54e-01 95.5% 71.8%
3m1mA03 1.10.1240.50 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.62 44.0 3.76e-01 75.8% 86.4%
5l0wB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.61 52.0 4.06e-01 93.9% 45.7%
3fnbA01 1.20.1440.110 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase 0.59 50.0 4.24e-01 97.0% 98.2%
4fjqA02 1.50.10.130 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Terpene synthase, N-terminal domain 0.58 51.0 3.86e-01 100.0% 56.8%
6f1eA01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.53 40.0 3.19e-01 81.8% 58.3%
3tzlA02 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.52 40.0 3.51e-01 86.4% 92.3%
4c3eM00 1.20.120.1350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain 0.51 39.0 2.98e-01 81.8% 52.9%
1vb3A01 3.90.1380.10 Alpha Beta › Alpha-Beta Complex › threonine synthase, domain 1, chain A › Threonine synthase, N-terminal domain 0.51 36.0 3.44e-01 86.4% 63.0%
2ongA01 1.50.10.130 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Terpene synthase, N-terminal domain 0.50 38.0 2.77e-01 84.8% 46.1%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3987571 2004.1.1.6 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran,oligo_HPY 0.68 55.0 3.17e-01 89.4% 56.3%
3699187 2004.1.1.94 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP_bind_1 0.66 49.0 3.25e-01 80.3% 37.4%
3254003 133.1.1.1 ↗ alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF 0.65 54.0 3.70e-01 89.4% 84.5%
4959990 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.65 54.0 4.31e-01 90.9% 77.7%
5007421 2484.1.1.333 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF1464 0.60 44.0 3.39e-01 77.3% 71.3%
3730713 109.4.1.194 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_10 0.60 55.0 4.58e-01 100.0% 70.9%
3170657 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 54.0 3.38e-01 100.0% 33.8%
3343263 109.2.1.7 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Terpene_synth 0.59 52.0 3.73e-01 100.0% 66.2%
3258340 133.1.1.1 ↗ alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF 0.56 50.0 3.36e-01 100.0% 81.6%
3266680 133.1.1.1 ↗ alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF 0.55 49.0 3.40e-01 100.0% 80.0%
3693862 109.4.1.1848 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_10, TPR_19 0.54 47.0 2.81e-01 93.9% 14.5%
3271077 133.1.1.1 ↗ alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF 0.54 47.0 3.36e-01 100.0% 83.3%
3705441 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 47.0 2.92e-01 100.0% 33.3%
3723953 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 44.0 3.13e-01 100.0% 55.2%
3751716 198.1.1.6 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › Saposin 0.53 36.0 3.47e-01 72.7% 61.3%
D2 medium residues 5-102
PDB