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NC_048193.1__YP_009823408.1__HOV50_gp52__00052
Bact-VirNC_048193.1__YP_009823408.1__HOV50_gp52__00052
Identity
- Accession:
- NC_048193 ↗
- Kingdom:
- phage
Quality
80.1
mean pLDDT
Taxonomy
TaxID: 2508206
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-87
Domain cluster:
representative
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3smvA02 | 1.10.150.750 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.79 | 51.0 | 5.37e-01 | 87.4% | 74.0% |
| 3zxxA00 | 3.40.50.200 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain | 0.69 | 56.0 | 3.95e-01 | 87.4% | 99.2% |
| 4aktB00 | 3.40.50.200 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain | 0.68 | 58.0 | 3.89e-01 | 92.0% | 95.4% |
| 1h72C01 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.64 | 43.0 | 3.48e-01 | 89.7% | 37.3% |
| 2dsyD00 | 3.30.160.250 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.62 | 42.0 | 4.39e-01 | 71.3% | 79.0% |
| 2nn5A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.62 | 49.0 | 3.97e-01 | 87.4% | 93.0% |
| 6whjD00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.61 | 46.0 | 3.19e-01 | 80.5% | 99.4% |
| 7aj0A01 | 3.40.720.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A | 0.61 | 55.0 | 3.56e-01 | 100.0% | 68.3% |
| 2e87A01 | 1.20.120.1190 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.60 | 54.0 | 4.42e-01 | 100.0% | 79.4% |
| 4ep4A00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.58 | 40.0 | 3.22e-01 | 85.1% | 37.3% |
| 1phkA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.58 | 45.0 | 3.62e-01 | 86.2% | 85.5% |
| 2dbuA02 | 1.10.246.130 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain | 0.58 | 40.0 | 3.74e-01 | 72.4% | 86.5% |
| 1gqyB02 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.57 | 41.0 | 3.12e-01 | 77.0% | 43.8% |
| 4lvnA00 | 3.40.50.200 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain | 0.56 | 50.0 | 3.41e-01 | 100.0% | 92.6% |
| 3e82E02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.56 | 39.0 | 2.95e-01 | 72.4% | 78.0% |
| 1nw1A02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.55 | 42.0 | 3.00e-01 | 81.6% | 57.1% |
| 1cg5B00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.55 | 44.0 | 3.75e-01 | 87.4% | 85.8% |
| 1f2uB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 41.0 | 3.46e-01 | 81.6% | 59.3% |
| 2zyoA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.53 | 38.0 | 2.95e-01 | 74.7% | 76.7% |
| 3bf5A01 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.53 | 44.0 | 3.27e-01 | 93.1% | 89.9% |
| 1y13A00 | 3.30.479.10 | Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD | 0.52 | 46.0 | 3.78e-01 | 100.0% | 68.1% |
| 3pl2A01 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.52 | 44.0 | 3.23e-01 | 98.9% | 92.8% |
| 3l44A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 36.0 | 2.86e-01 | 73.6% | 59.0% |
| 4o1gA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.51 | 44.0 | 3.07e-01 | 98.9% | 81.7% |
| 1w78A01 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.51 | 38.0 | 2.73e-01 | 80.5% | 30.9% |
| 4hs5A00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.51 | 39.0 | 3.68e-01 | 81.6% | 77.1% |
| 5b4wA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 43.0 | 2.86e-01 | 98.9% | 97.0% |
| 5i92F01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.51 | 37.0 | 2.88e-01 | 73.6% | 60.8% |
| 2olpA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.51 | 40.0 | 3.39e-01 | 86.2% | 79.5% |
| 4xxfA00 | 3.40.225.10 | Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain | 0.51 | 44.0 | 3.24e-01 | 98.9% | 65.5% |
| 4huqS00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.51 | 39.0 | 3.22e-01 | 83.9% | 44.5% |
| 3wpwA00 | 3.30.1330.60 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain | 0.50 | 43.0 | 3.68e-01 | 97.7% | 96.0% |
| 3kkjA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.50 | 35.0 | 2.86e-01 | 72.4% | 99.3% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4961481 | 4325.1.1.0 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like | 0.68 | 47.0 | 5.14e-01 | 80.5% | 88.6% |
| 3739038 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.64 | 43.0 | 3.59e-01 | 82.8% | 40.7% |
| 3614593 | 4070.1.1.1 ↗ | alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M41 | 0.63 | 44.0 | 3.28e-01 | 72.4% | 30.7% |
| 2442362 | 1021.1.1.2 ↗ | a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › RNA_hel_CTD | 0.62 | 38.0 | 4.31e-01 | 83.9% | 84.1% |
| 3578128 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.60 | 35.0 | 4.09e-01 | 71.3% | 89.1% |
| 3288944 | 1075.1.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane | 0.59 | 53.0 | 3.70e-01 | 100.0% | 55.0% |
| 4933877 | 281.1.1.1 ↗ | a+b three layers › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase › Aldolase_II | 0.58 | 48.0 | 3.69e-01 | 94.3% | 77.2% |
| 4162427 | 2484.1.1.25 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC | 0.58 | 38.0 | 3.10e-01 | 86.2% | 36.9% |
| 5012906 | 2498.2.1.6 ↗ | mixed a+b and a/b › Zincin-like › beta-N-acetylhexosaminidase-like domain › beta-N-acetylhexosaminidase-like domain › S_layer_C | 0.57 | 40.0 | 2.99e-01 | 72.4% | 94.6% |
| 3218713 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.57 | 46.0 | 3.27e-01 | 87.4% | 38.8% |
| 4969909 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.56 | 43.0 | 3.54e-01 | 80.5% | 49.3% |
| 4943589 | 331.1.1.28 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › Fer4_7 | 0.55 | 44.0 | 3.71e-01 | 90.8% | 88.1% |
| 3607455 | 2002.1.1.192 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AMP_deaminase | 0.54 | 41.0 | 2.29e-01 | 80.5% | 28.6% |
| 3463110 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.54 | 47.0 | 3.28e-01 | 96.6% | 78.6% |
| 3373467 | 327.11.2.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_6 | 0.54 | 41.0 | 3.92e-01 | 83.9% | 93.3% |
| 3958923 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.53 | 38.0 | 2.96e-01 | 85.1% | 33.0% |
| 3289942 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 33.0 | 3.37e-01 | 73.6% | 62.4% |
| 51101 | 106.1.1.0 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like | 0.52 | 42.0 | 3.63e-01 | 89.7% | 90.1% |
| None | — | 0.52 | 37.0 | 2.52e-01 | 75.9% | 87.3% | |
| 3719098 | 2002.1.1.192 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AMP_deaminase | 0.52 | 39.0 | 2.20e-01 | 81.6% | 28.7% |
| 4976401 | 230.1.1.3 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS | 0.51 | 43.0 | 3.58e-01 | 92.0% | 64.5% |
| 4002544 | 5.1.4.298 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_ELP1_1st, Beta-prop_ELP1_2nd | 0.51 | 44.0 | 2.76e-01 | 98.9% | 62.9% |
| 5025215 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.51 | 39.0 | 2.60e-01 | 82.8% | 52.6% |
| 3788044 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.51 | 36.0 | 2.70e-01 | 74.7% | 27.9% |
| 3274295 | 3862.1.1.5 ↗ | extended segments › Envelope small membrane protein › Envelope small membrane protein › Envelope small membrane protein › RENR_N | 0.51 | 39.0 | 2.55e-01 | 85.1% | 27.9% |