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NC_048195.1__YP_009823560.1__HOV52_gp007__00007

Bact-Vir

NC_048195.1__YP_009823560.1__HOV52_gp007__00007

Identity

Accession:
NC_048195 ↗
Kingdom:
phage

Quality

70.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lindbergviridae› Wifcevirus› Escherichia_phage_vB_EcoM_WFC

TaxID: 2508193

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-95
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gfgA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.70 48.0 3.77e-01 70.7% 80.1%
2ffsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.63 41.0 3.49e-01 96.7% 41.4%
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.63 39.0 3.35e-01 95.7% 39.0%
4r7rA00 3.30.1490.410 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Uncharacterised protein PF16224, DUF4883 0.61 53.0 4.92e-01 100.0% 82.8%
3ovcA01 3.30.200.150 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.59 37.0 4.12e-01 89.1% 80.3%
5m3nA03 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.58 34.0 3.38e-01 80.4% 55.7%
4jj0B00 2.30.42.60 Mainly Beta › Roll › Pdz3 Domain › 0.58 35.0 2.75e-01 79.3% 31.1%
4yo1A03 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.56 34.0 3.44e-01 80.4% 60.0%
7co7D03 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.54 33.0 3.36e-01 80.4% 60.6%
4hbrA00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 43.0 3.71e-01 93.5% 55.0%
4fr9A00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 41.0 3.54e-01 92.4% 53.2%
1ospO01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.53 38.0 3.68e-01 87.0% 66.7%
2ntkB00 3.60.20.20 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Inosine monophosphate cyclohydrolase-like 0.53 37.0 2.98e-01 75.0% 94.1%
1mdcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 37.0 3.39e-01 75.0% 87.0%
1ksiA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 38.0 3.79e-01 89.1% 74.0%
2q9kA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 46.0 3.92e-01 100.0% 95.9%
6fopA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.51 41.0 3.12e-01 88.0% 80.5%
1v7wA01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.50 40.0 2.86e-01 88.0% 87.7%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3877198 9.3.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.64 39.0 3.86e-01 98.9% 56.0%
3778003 366.1.1.0 ↗ few secondary structure elements › Blood coagulation inhibitor (disintegrin) › Blood coagulation inhibitor (disintegrin) › Blood coagulation inhibitor (disintegrin) 0.64 40.0 4.02e-01 98.9% 61.1%
4935086 3504.3.1.1 ↗ beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N 0.63 40.0 3.42e-01 97.8% 38.7%
3681325 9.3.1.4 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › DUF2921_N 0.62 46.0 3.75e-01 77.2% 89.1%
3629867 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.58 43.0 2.91e-01 100.0% 21.8%
4003998 3794.1.1.0 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.58 41.0 3.70e-01 100.0% 53.1%
3901836 9.13.1.0 ↗ beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like 0.57 41.0 3.89e-01 98.9% 63.6%
4137973 1.1.5.26 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.56 45.0 4.31e-01 88.0% 90.0%
3894826 9.13.1.0 ↗ beta barrels › Lipocalins/Streptavidin › AOC barrel-like › AOC barrel-like 0.56 41.0 3.87e-01 95.7% 64.5%
4417145 1.1.5.26 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.55 45.0 4.17e-01 88.0% 87.0%
4398032 1.1.5.26 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.55 45.0 4.17e-01 88.0% 85.2%
3188402 4099.1.1.31 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › PF26204 0.54 42.0 3.29e-01 92.4% 38.5%
4973793 243.5.1.0 ↗ a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region 0.54 38.0 3.91e-01 73.9% 93.3%
5025781 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.53 41.0 2.85e-01 81.5% 56.6%
4156970 1.1.5.26 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.53 43.0 3.97e-01 88.0% 82.5%
5073365 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.52 36.0 3.76e-01 93.5% 77.6%
3933986 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.51 40.0 2.68e-01 100.0% 22.6%
4990181 206.1.1.9 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › RIO1 0.50 40.0 3.04e-01 97.8% 34.8%