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NC_048195.1__YP_009823659.1__HOV52_gp106__00106

Bact-Vir

NC_048195.1__YP_009823659.1__HOV52_gp106__00106

Identity

Accession:
NC_048195 ↗
Kingdom:
phage

Quality

77.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lindbergviridae› Wifcevirus› Escherichia_phage_vB_EcoM_WFC

TaxID: 2508193

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-71
PDB
Domain cluster: rep: IMGVR_UViG_3300014869_000057-3300014869-Ga0180298_10014035__D9-66
D2 high residues 87-170
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gvnA00 1.10.8.130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.79 59.0 5.88e-01 78.6% 89.7%
1e1dA02 1.20.1270.20 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.78 59.0 5.91e-01 78.6% 83.3%
1i5nB00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.78 56.0 4.91e-01 75.0% 59.7%
4fz4A00 1.20.140.130 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.77 57.0 4.65e-01 78.6% 48.7%
4kjmB01 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.74 51.0 5.77e-01 71.4% 100.0%
1xvhB00 1.20.120.1850 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Ebh helix bundles repeating unit (S and A modules) 0.74 51.0 4.52e-01 71.4% 53.4%
2c2jA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.70 51.0 4.10e-01 77.4% 83.6%
2pbeA02 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.67 52.0 4.55e-01 83.3% 69.8%
1nfvA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.66 48.0 3.89e-01 77.4% 76.9%
3vkgB06 1.20.920.20 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › 0.66 48.0 3.49e-01 78.6% 71.4%
2zopA00 1.10.520.30 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain 0.65 44.0 4.01e-01 70.2% 58.0%
3e3vA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 32.0 3.85e-01 89.3% 71.4%
3islA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.64 51.0 4.50e-01 88.1% 83.6%
2lyiA01 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.64 48.0 4.04e-01 81.0% 82.4%
3bhgA01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.63 47.0 4.24e-01 78.6% 78.3%
1qdbA02 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.62 55.0 4.62e-01 98.8% 75.5%
2vzbB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.61 49.0 3.93e-01 86.9% 64.1%
3h0dB02 1.10.1200.150 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Transcriptional repressor of class III stress genes, C-terminal domain 0.60 42.0 4.32e-01 73.8% 76.5%
3dplC03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 35.0 3.61e-01 84.5% 60.2%
1k32A03 3.30.750.44 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › 0.58 44.0 4.71e-01 84.5% 100.0%
1ac1A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.57 46.0 3.69e-01 97.6% 41.5%
3gl5A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 49.0 3.74e-01 100.0% 60.7%
1wwmA00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.56 44.0 3.56e-01 88.1% 82.8%
2mx8A01 1.10.274.70 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain 0.56 45.0 4.10e-01 88.1% 81.4%
2i53A01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.55 43.0 3.63e-01 83.3% 57.3%
3iq1B00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.55 43.0 3.54e-01 86.9% 62.3%
2oerA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 36.0 2.89e-01 70.2% 65.9%
3bosA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.53 34.0 3.76e-01 81.0% 80.6%
1iruI00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.53 41.0 3.03e-01 82.1% 75.9%
2wyhB02 1.10.1240.90 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.53 38.0 3.58e-01 83.3% 60.4%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.52 39.0 4.14e-01 78.6% 97.3%
3ay5A01 1.20.1420.10 Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain 0.52 45.0 3.85e-01 94.0% 88.0%
3cxbA03 1.10.1740.30 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain 0.51 38.0 3.89e-01 77.4% 86.4%
4mn0A00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.51 40.0 3.33e-01 92.9% 69.1%
1x42A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.51 38.0 3.83e-01 82.1% 91.6%
2d2sA01 1.20.58.1210 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, N-terminal helical domain 0.50 38.0 3.44e-01 82.1% 76.7%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3286065 632.15.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) 0.77 58.0 6.24e-01 78.6% 100.0%
4297295 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.76 56.0 5.87e-01 77.4% 92.0%
4206040 4044.1.1.1 ↗ alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Prismane 0.76 64.0 5.19e-01 91.7% 83.2%
3984588 4044.1.1.1 ↗ alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Prismane 0.74 64.0 5.39e-01 92.9% 77.8%
4116362 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.74 54.0 5.57e-01 77.4% 88.7%
3789506 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.74 53.0 4.63e-01 76.2% 84.6%
4499455 633.5.1.1 ↗ alpha bundles › Bromodomain-like › LemA-like › LemA-like › LemA 0.73 59.0 4.79e-01 88.1% 56.2%
4131078 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.73 53.0 5.46e-01 77.4% 95.0%
4653139 4044.1.1.1 ↗ alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Prismane 0.73 65.0 5.87e-01 96.4% 96.4%
2982752 1189.1.1.2 ↗ alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG_B 0.72 52.0 3.42e-01 76.2% 92.1%
5070731 632.18.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › hypothetical protein PA2901 › hypothetical protein PA2901 0.72 53.0 5.40e-01 77.4% 81.2%
3510564 1128.1.1.0 ↗ alpha bundles › LYR protein › LYR protein › LYR protein 0.71 53.0 4.93e-01 78.6% 65.0%
3286837 633.6.1.0 ↗ alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like 0.69 55.0 5.00e-01 86.9% 83.5%
3896767 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.69 52.0 5.52e-01 78.6% 88.0%
3976111 632.1.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.69 51.0 4.82e-01 77.4% 74.0%
4221251 1128.1.1.8 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › PF29574 0.69 51.0 5.11e-01 78.6% 82.4%
4194678 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.68 50.0 5.09e-01 77.4% 92.5%
3776363 873.1.1.5 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB 0.68 60.0 4.47e-01 100.0% 41.9%
4479999 632.19.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A 0.68 50.0 4.62e-01 77.4% 69.5%
3811877 3937.1.1.0 ↗ alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 0.64 50.0 4.01e-01 83.3% 73.9%
4991809 206.1.3.3 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › PPDK_N 0.64 58.0 3.68e-01 100.0% 51.2%
4111221 3413.1.1.1 ↗ alpha bundles › Inositol phosphate phosphatase sopB N-terminal domain › Inositol phosphate phosphatase sopB N-terminal domain › Inositol phosphate phosphatase sopB N-terminal domain › IpgD 0.64 55.0 5.22e-01 97.6% 89.0%
3787874 180.1.1.6 ↗ alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › FIT 0.64 49.0 3.79e-01 84.5% 58.0%
3360483 170.1.1.0 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C 0.63 37.0 4.13e-01 72.6% 75.4%
3984430 2007.2.4.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Phosphoinositide phosphatase › IpgD 0.63 55.0 3.47e-01 100.0% 86.9%
3516201 133.1.1.1 ↗ alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF 0.61 47.0 3.51e-01 82.1% 65.2%
3696174 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.60 45.0 3.79e-01 78.6% 59.3%
3713527 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.59 43.0 3.05e-01 79.8% 30.3%
3528875 7061.1.1.1 ↗ few secondary structure elements › VWF C8-3 module › VWF C8-3 module › VWF C8-3 module › C8 0.57 41.0 3.69e-01 81.0% 52.5%
3470292 6164.1.1.0 ↗ alpha bundles › Bestrophin › Bestrophin › Bestrophin 0.56 43.0 2.92e-01 84.5% 37.6%
2905612 592.4.1.1 ↗ alpha arrays › PWI domain-like › Repetitive domains of egg case silk protein TuSp1 › Repetitive domains of egg case silk protein TuSp1 › RP1-2 0.56 46.0 4.26e-01 97.6% 82.9%
4023278 2006.1.1.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.55 44.0 3.25e-01 92.9% 41.3%
4999090 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.54 39.0 3.46e-01 77.4% 70.8%
5053184 2006.1.1.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.54 41.0 3.03e-01 82.1% 65.5%
5074733 140.1.1.7 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_2 0.54 40.0 3.37e-01 78.6% 65.7%
4426428 198.1.1.12 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › DUF445 0.52 36.0 3.35e-01 100.0% 57.1%
3959026 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.52 36.0 3.61e-01 81.0% 70.6%
3473137 604.9.1.2 ↗ alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Strabismus 0.51 35.0 3.36e-01 71.4% 84.0%
3622034 6164.1.1.1 ↗ alpha bundles › Bestrophin › Bestrophin › Bestrophin › Bestrophin 0.50 40.0 2.77e-01 91.7% 30.6%
4936016 7516.1.1.26 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_tranf_2_3 0.50 39.0 2.64e-01 89.3% 91.9%