←Back to structures
NC_048628.1__YP_009829868.1__HWA83_gp57__00057
Bact-VirNC_048628.1__YP_009829868.1__HWA83_gp57__00057
Identity
- Accession:
- NC_048628 ↗
- Kingdom:
- phage
Quality
89.6
mean pLDDT
Taxonomy
TaxID: 1118064
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-57
Domain cluster:
representative
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2n1hA00 | 2.70.130.10 | Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain | 0.71 | 45.0 | 3.60e-01 | 93.8% | 33.0% |
| 4hkjD00 | 2.60.240.30 | Mainly Beta › Sandwich › Viral Chemokine Inhibitor; Chain A › | 0.70 | 51.0 | 3.50e-01 | 100.0% | 21.0% |
| 6z30A01 | 2.70.130.10 | Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain | 0.69 | 45.0 | 3.28e-01 | 93.8% | 24.1% |
| 3aihB01 | 2.70.130.10 | Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain | 0.68 | 46.0 | 3.56e-01 | 93.8% | 31.8% |
| 2v5nA02 | 2.70.130.10 | Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain | 0.67 | 44.0 | 3.25e-01 | 93.8% | 24.4% |
| 2qdfA02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.66 | 58.0 | 4.78e-01 | 97.9% | 95.2% |
| 1q25A01 | 2.70.130.10 | Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain | 0.65 | 42.0 | 3.15e-01 | 93.8% | 24.8% |
| 6j09A02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.62 | 54.0 | 4.65e-01 | 100.0% | 100.0% |
| 4k3bA02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.61 | 52.0 | 4.41e-01 | 100.0% | 94.0% |
| 5efrA01 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.61 | 52.0 | 4.46e-01 | 100.0% | 100.0% |
| 4k3bA05 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.60 | 51.0 | 4.43e-01 | 100.0% | 92.4% |
| 2kvaA01 | 2.70.130.10 | Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain | 0.59 | 39.0 | 2.90e-01 | 93.8% | 23.4% |
| 3ozoA01 | 3.30.379.10 | Alpha Beta › 2-Layer Sandwich › Chitobiase; domain 2 › Chitobiase/beta-hexosaminidase domain 2-like | 0.59 | 48.0 | 3.30e-01 | 95.8% | 41.8% |
| 5uayA01 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.56 | 49.0 | 4.15e-01 | 100.0% | 86.6% |
| 3r0aA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 40.0 | 3.10e-01 | 81.2% | 52.5% |
| 1g9mG00 | 2.170.40.20 | Mainly Beta › Beta Complex › HIV Envelope Protein Gp120; Chain G › Human immunodeficiency virus 1, Gp160, envelope glycoprotein | 0.55 | 45.0 | 2.84e-01 | 100.0% | 34.8% |
| 4z04A00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.55 | 47.0 | 3.52e-01 | 100.0% | 50.0% |
| 2qcuB01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.54 | 46.0 | 2.96e-01 | 95.8% | 25.8% |
| 3gg6A00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.54 | 46.0 | 3.33e-01 | 100.0% | 88.9% |
| 2i7rA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.53 | 45.0 | 3.41e-01 | 95.8% | 47.4% |
| 1j5pA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.53 | 42.0 | 3.40e-01 | 93.8% | 58.3% |
| 2vh2B01 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.53 | 45.0 | 3.93e-01 | 93.8% | 91.7% |
| 5h20A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 39.0 | 3.13e-01 | 83.3% | 64.1% |
| 3ievA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 45.0 | 3.06e-01 | 100.0% | 32.3% |
| 2xtlA02 | 2.60.40.1140 | Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain | 0.53 | 46.0 | 3.64e-01 | 100.0% | 89.9% |
| 4kl0A00 | 3.90.245.10 | Alpha Beta › Alpha-Beta Complex › Inosine-uridine Nucleoside N-ribohydrolase; Chain A › Ribonucleoside hydrolase-like | 0.52 | 41.0 | 2.56e-01 | 100.0% | 36.3% |
| 3rheA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.51 | 43.0 | 3.30e-01 | 95.8% | 49.1% |
| 3r7wA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 38.0 | 2.72e-01 | 89.6% | 24.2% |
| 3vcxA02 | 3.30.720.110 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.51 | 43.0 | 4.22e-01 | 95.8% | 98.1% |
| 1kllA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.51 | 35.0 | 2.71e-01 | 95.8% | 28.9% |
| 3vb0A01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.51 | 42.0 | 3.08e-01 | 93.8% | 45.7% |
| 5c5zA00 | 3.10.490.10 | Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like | 0.50 | 43.0 | 3.25e-01 | 100.0% | 82.7% |
| 4cz2B00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 42.0 | 2.94e-01 | 97.9% | 47.5% |
| 1d2oA02 | 2.60.40.1140 | Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain | 0.50 | 40.0 | 3.56e-01 | 100.0% | 100.0% |
| 4jtmA00 | 3.55.50.30 | Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › | 0.50 | 43.0 | 3.53e-01 | 91.7% | 65.4% |
| 2x8xX02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.50 | 42.0 | 3.72e-01 | 100.0% | 94.7% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3719174 | 63.1.1.3 ↗ | beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › PRKCSH | 0.77 | 51.0 | 3.40e-01 | 93.8% | 18.3% |
| 3597997 | 63.1.1.0 ↗ | beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain | 0.72 | 51.0 | 3.68e-01 | 93.8% | 26.7% |
| 3620401 | 63.1.1.3 ↗ | beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › PRKCSH | 0.70 | 49.0 | 3.60e-01 | 93.8% | 27.7% |
| 3702362 | 63.1.1.3 ↗ | beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › PRKCSH | 0.70 | 47.0 | 3.32e-01 | 93.8% | 22.8% |
| 4649150 | 63.1.1.0 ↗ | beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain | 0.67 | 47.0 | 3.26e-01 | 93.8% | 22.6% |
| 141830 | 63.1.1.3 ↗ | beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › PRKCSH | 0.66 | 47.0 | 3.62e-01 | 93.8% | 32.7% |
| 3594957 | 63.1.1.0 ↗ | beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain | 0.65 | 45.0 | 3.21e-01 | 93.8% | 22.5% |
| 3553878 | 63.1.1.0 ↗ | beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain | 0.65 | 41.0 | 3.19e-01 | 93.8% | 26.3% |
| 2672132 | 63.1.1.1 ↗ | beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › CIMR | 0.64 | 42.0 | 3.07e-01 | 93.8% | 22.0% |
| 3980571 | 4334.1.1.1 ↗ | beta complex topology › Inserted beta sandwich domain in Dac-like proteins › Inserted beta sandwich domain in Dac-like proteins › Inserted beta sandwich domain in Dac-like proteins › Peptidase_S13 | 0.64 | 46.0 | 3.87e-01 | 93.8% | 46.3% |
| 4115098 | 3121.1.1.1 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA | 0.63 | 56.0 | 4.65e-01 | 100.0% | 94.1% |
| 2547933 | 3121.1.1.1 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA | 0.63 | 55.0 | 4.57e-01 | 100.0% | 96.5% |
| 4541918 | 3121.1.1.1 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA | 0.61 | 54.0 | 4.55e-01 | 100.0% | 96.2% |
| 3665034 | 2004.1.1.118 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AIG1 | 0.60 | 41.0 | 2.61e-01 | 77.1% | 60.3% |
| 3600888 | 11.8.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Osmotin-like › Osmotin-like | 0.57 | 48.0 | 3.23e-01 | 100.0% | 76.9% |
| 3895865 | 3715.1.1.3 ↗ | a+b two layers › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal protein L22e › PF30893 | 0.57 | 50.0 | 4.31e-01 | 100.0% | 92.0% |
| 3561026 | 1086.1.1.4 ↗ | beta meanders › C-terminal beta-hairpin in astrotactin-2 › C-terminal beta-hairpin in astrotactin-2 › C-terminal beta-hairpin in astrotactin-2 › ASTN_1_2_N | 0.56 | 45.0 | 3.45e-01 | 93.8% | 49.2% |
| 4005981 | 2003.1.2.12 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › DAO | 0.56 | 47.0 | 3.00e-01 | 93.8% | 25.8% |
| 3407499 | 63.1.1.1 ↗ | beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › CIMR | 0.56 | 44.0 | 3.19e-01 | 93.8% | 30.7% |
| 4570617 | 3121.1.1.2 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA_1 | 0.56 | 47.0 | 4.16e-01 | 93.8% | 92.9% |
| 4964659 | 211.1.1.6 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase_3 | 0.55 | 41.0 | 3.03e-01 | 85.4% | 33.8% |
| 3753927 | 389.1.1.131 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › ASTN_1_2_N | 0.55 | 45.0 | 3.21e-01 | 100.0% | 36.0% |
| 4109827 | 3121.1.1.2 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA_1 | 0.54 | 46.0 | 3.65e-01 | 93.8% | 69.5% |
| 4206820 | 3121.1.1.2 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA_1 | 0.54 | 46.0 | 3.69e-01 | 93.8% | 74.4% |
| 4523828 | 101.26.1.2 ↗ | alpha arrays › HTH › Tex N-terminal domain › Tex N-terminal domain › HTH_44 | 0.54 | 44.0 | 3.28e-01 | 100.0% | 61.4% |
| 3508135 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.53 | 42.0 | 3.61e-01 | 89.6% | 63.7% |
| 4526501 | 3121.1.1.2 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA_1 | 0.53 | 46.0 | 4.03e-01 | 95.8% | 92.9% |
| 4647372 | 140.1.1.14 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1e | 0.52 | 42.0 | 2.83e-01 | 93.8% | 34.3% |
| 3336093 | 2004.1.1.118 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AIG1 | 0.52 | 45.0 | 2.81e-01 | 100.0% | 21.8% |
| 4642298 | 3121.1.1.2 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA_1 | 0.52 | 47.0 | 4.02e-01 | 100.0% | 92.0% |
| 5044848 | 2004.1.1.16 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf | 0.52 | 39.0 | 2.82e-01 | 87.5% | 28.5% |
| 4270848 | 3121.1.1.2 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA_1 | 0.52 | 46.0 | 3.95e-01 | 97.9% | 92.0% |
| 4636192 | 3121.1.1.2 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA_1 | 0.52 | 44.0 | 3.94e-01 | 100.0% | 95.7% |
| 4078764 | 3121.1.1.2 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA_1 | 0.52 | 47.0 | 3.93e-01 | 100.0% | 82.5% |
| 3428887 | 1.1.11.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 | 0.51 | 46.0 | 3.68e-01 | 100.0% | 64.9% |
| 3706436 | 2004.1.1.119 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Gtr1_RagA | 0.51 | 37.0 | 2.54e-01 | 81.2% | 18.6% |
| 4032219 | 3121.1.1.2 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA_1 | 0.51 | 45.0 | 3.59e-01 | 97.9% | 69.5% |
| None | — | 0.51 | 42.0 | 2.87e-01 | 95.8% | 42.6% | |
| 4132904 | 3121.1.1.2 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA_1 | 0.51 | 44.0 | 3.87e-01 | 95.8% | 92.9% |
| 4042900 | 3121.1.1.2 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA_1 | 0.51 | 45.0 | 3.59e-01 | 100.0% | 69.5% |
| 4398321 | 2004.1.1.47 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › G-alpha | 0.51 | 37.0 | 2.43e-01 | 85.4% | 26.5% |
| 1214539 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.50 | 43.0 | 4.00e-01 | 97.9% | 96.7% |
| 3178843 | 211.1.1.6 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase_3 | 0.50 | 42.0 | 2.91e-01 | 97.9% | 32.0% |