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NC_048632.1__YP_009829960.1__HWA87_gp12__00012
Bact-VirNC_048632.1__YP_009829960.1__HWA87_gp12__00012
Identity
- Accession:
- NC_048632 ↗
- Kingdom:
- phage
Quality
91.7
mean pLDDT
Taxonomy
TaxID: 1654888
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 73-132
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF20454.5 best | GpA_nuclease | 34.2 | 2.20e-08 | 98.3% | 16.7% |
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4lzgA01 | 1.10.150.110 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like | 0.67 | 45.0 | 3.90e-01 | 73.3% | 44.1% |
| 3draA00 | 1.25.40.120 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Protein prenylyltransferase | 0.67 | 56.0 | 3.59e-01 | 95.0% | 29.1% |
| 2jvgA00 | 1.10.10.1270 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sbi, C3 binding domain IV | 0.65 | 44.0 | 4.20e-01 | 71.7% | 70.8% |
| 7wu8B01 | 1.20.1160.20 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › | 0.65 | 52.0 | 4.72e-01 | 86.7% | 75.9% |
| 1f5qB02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.61 | 49.0 | 3.78e-01 | 88.3% | 84.8% |
| 4w9rA02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.61 | 47.0 | 4.14e-01 | 88.3% | 96.8% |
| 1fi4A02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.60 | 47.0 | 3.36e-01 | 88.3% | 82.3% |
| 2i71A02 | 1.10.3740.10 | Mainly Alpha › Orthogonal Bundle › SSO1389-like fold › SSO1389-like domains | 0.60 | 38.0 | 2.86e-01 | 71.7% | 26.4% |
| 4bkxA01 | 4.10.1240.50 | Few Secondary Structures › Irregular › Hormone receptor fold › | 0.59 | 48.0 | 3.90e-01 | 90.0% | 71.7% |
| 6wilA02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.58 | 40.0 | 3.53e-01 | 70.0% | 54.8% |
| 1ggwA02 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.56 | 41.0 | 3.93e-01 | 80.0% | 78.6% |
| 6z01B01 | 1.10.10.41 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Yeast DNA topoisomerase - domain 1 | 0.54 | 40.0 | 3.74e-01 | 81.7% | 64.1% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3981015 | 2004.1.1.731 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GpA_ATPase, GpA_nuclease | 0.98 | 77.0 | 4.54e-01 | 81.7% | 13.2% |
| 3980011 | 2004.1.1.731 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GpA_ATPase, GpA_nuclease | 0.98 | 77.0 | 4.60e-01 | 81.7% | 14.7% |
| 1429599 | 2490.3.1.4 ↗ | a/b three-layered sandwiches › Ribosomal protein L13/L15p/L18e/L32e › Ribosomal proteins L15p and L18e › Ribosomal proteins L15p and L18e › Ribosomal_L27A, Ribosomal_L18 | 0.72 | 44.0 | 3.52e-01 | 71.7% | 30.8% |
| 3714990 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.65 | 44.0 | 3.09e-01 | 70.0% | 43.8% |
| 3545090 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.63 | 44.0 | 2.97e-01 | 73.3% | 66.4% |
| 3784719 | 109.4.1.64 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › GET4 | 0.63 | 49.0 | 3.16e-01 | 88.3% | 34.4% |
| 3867774 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.63 | 44.0 | 2.56e-01 | 73.3% | 28.3% |
| 4028436 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.57 | 40.0 | 2.66e-01 | 75.0% | 34.9% |
| 3489798 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.54 | 42.0 | 3.72e-01 | 91.7% | 55.0% |
| 4407089 | 3121.1.1.2 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA_1 | 0.53 | 40.0 | 3.91e-01 | 88.3% | 74.3% |
| 3255630 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 38.0 | 3.84e-01 | 83.3% | 76.7% |
| 3598235 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.51 | 38.0 | 3.69e-01 | 83.3% | 75.7% |
| 3909626 | 108.1.1.98 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_5, EF-hand_7 | 0.51 | 34.0 | 3.33e-01 | 71.7% | 64.6% |