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NC_048632.1__YP_009830007.1__HWA87_gp59__00059

Bact-Vir

NC_048632.1__YP_009830007.1__HWA87_gp59__00059

Identity

Accession:
NC_048632 ↗
Kingdom:
phage

Quality

76.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Casjensviridae› Chivirus› Salmonella_phage_35

TaxID: 1654888

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 36-91
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zt5A02 3.30.40.230 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.59 45.0 4.11e-01 91.1% 100.0%
1es6A02 2.60.510.10 Mainly Beta › Sandwich › EV matrix protein fold › EV matrix protein 0.57 47.0 3.94e-01 92.9% 100.0%
3raoB00 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.57 42.0 2.64e-01 82.1% 56.7%
6hmjA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 37.0 3.16e-01 73.2% 84.8%
1wgmA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.53 43.0 4.04e-01 94.6% 79.5%
3delB02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.53 45.0 3.87e-01 98.2% 100.0%
2e26A01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 44.0 3.10e-01 100.0% 57.4%
2qyzA01 3.30.1490.160 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ctc02137 like domains 0.52 39.0 3.96e-01 87.5% 96.2%
1utbB02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.52 40.0 3.49e-01 91.1% 98.0%
3s98A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 39.0 3.56e-01 96.4% 59.8%
4pxdA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 38.0 3.11e-01 82.1% 92.2%
2woyA02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 34.0 2.55e-01 94.6% 24.1%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.51 41.0 3.95e-01 100.0% 78.8%
1dw0A00 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.51 36.0 2.96e-01 76.8% 97.3%
3tj8A02 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.51 41.0 3.77e-01 89.3% 85.1%
3luyA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.51 39.0 3.39e-01 85.7% 86.5%
3n5fA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 38.0 3.12e-01 85.7% 93.9%
1earA02 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.50 41.0 3.87e-01 92.9% 88.4%
3pvlA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.50 35.0 3.06e-01 76.8% 93.8%
2v8pA02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.50 40.0 3.24e-01 91.1% 97.4%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3607436 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.65 49.0 4.22e-01 85.7% 62.1%
4682714 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.58 48.0 4.53e-01 92.9% 100.0%
5054247 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 43.0 4.23e-01 89.3% 100.0%
5027463 304.48.1.32 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › TiaS-FLD 0.56 43.0 3.18e-01 87.5% 92.1%
3987392 304.4.1.4 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.54 46.0 3.78e-01 100.0% 89.1%
1584879 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 41.0 3.84e-01 85.7% 93.3%
5078772 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.54 42.0 4.04e-01 85.7% 100.0%
4951347 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.54 41.0 3.07e-01 85.7% 92.3%
5028844 304.7.1.0 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.53 39.0 3.62e-01 80.4% 90.7%
3173015 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.53 43.0 3.96e-01 91.1% 100.0%
5054705 304.7.1.0 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.53 40.0 3.59e-01 82.1% 77.5%
5001137 821.1.1.4 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF123 0.52 40.0 3.12e-01 87.5% 60.7%
3783125 4224.1.1.1 ↗ few secondary structure elements › CHY zinc finger › CHY zinc finger › CHY zinc finger › zf-CHY 0.52 36.0 3.44e-01 92.9% 60.0%
3593411 2003.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.52 39.0 2.38e-01 85.7% 91.0%
3785807 2008.2.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.51 40.0 3.13e-01 94.6% 68.3%
432311 304.22.1.1 ↗ a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C 0.51 41.0 3.67e-01 89.3% 78.8%
3977545 7527.1.1.2 ↗ a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › CoA_transf_3 0.50 34.0 2.11e-01 71.4% 15.6%
4472004 304.22.1.1 ↗ a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C 0.50 39.0 3.67e-01 91.1% 80.0%