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NC_048639.1__YP_009830589.1__HWA94_gp18__00018

Bact-Vir

NC_048639.1__YP_009830589.1__HWA94_gp18__00018

Identity

Accession:
NC_048639 ↗
Kingdom:
phage

Quality

67.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Zicotriavirus› Pseudomonas_phage_ZC08

TaxID: 1622116

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 195-336
PDB
Domain cluster: rep: NC_024142.2__YP_009113213.1__EpBp4_0025__00024__D208-334
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5dl8A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.58 43.0 3.12e-01 100.0% 27.9%
3qq2B00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.58 41.0 3.40e-01 81.0% 40.4%
1fx3B00 3.10.420.10 Alpha Beta › Roll › Bacterial Protein-export protein SecB › SecB-like 0.57 33.0 3.30e-01 100.0% 53.7%
1tu1A00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.54 34.0 3.44e-01 98.6% 62.5%
1bh3A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.53 31.0 2.49e-01 78.2% 26.6%
2vm9A02 2.60.40.2080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 25.0 2.97e-01 97.2% 64.3%
2hngA00 3.10.420.10 Alpha Beta › Roll › Bacterial Protein-export protein SecB › SecB-like 0.51 29.0 3.13e-01 97.9% 63.2%
3uebF00 3.30.300.100 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like 0.51 26.0 3.03e-01 100.0% 68.0%
1uyjA02 2.170.15.10 Mainly Beta › Beta Complex › Proaerolysin; Chain A, domain 3 › Proaerolysin, chain A, domain 3 0.51 43.0 3.92e-01 93.0% 76.4%
3dwoX00 2.40.160.60 Mainly Beta › Beta Barrel › Porin › Outer membrane protein transport protein (OMPP1/FadL/TodX) 0.50 43.0 3.08e-01 94.4% 76.4%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4999715 331.9.1.0 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.65 40.0 4.25e-01 98.6% 68.8%
4540264 504.1.1.1 ↗ a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › SecB 0.63 37.0 3.68e-01 100.0% 55.3%
3553322 5089.1.1.3 ↗ beta complex topology › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Gasdermin 0.58 50.0 4.25e-01 95.8% 86.1%
4301927 5084.1.1.10 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl 0.58 41.0 3.54e-01 73.9% 90.4%
4022200 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.55 31.0 3.92e-01 83.1% 91.8%
3838496 5084.1.1.15 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP 0.55 38.0 3.29e-01 70.4% 94.6%
4172098 5084.1.1.10 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl 0.55 39.0 3.51e-01 73.9% 94.0%
3839188 5084.1.1.15 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP 0.54 39.0 3.36e-01 75.4% 91.9%
5010189 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.54 41.0 4.23e-01 99.3% 82.0%
3837948 5084.1.1.15 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP 0.53 38.0 3.45e-01 73.9% 95.3%
1883909 5084.5.3.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel 0.52 47.0 3.04e-01 98.6% 98.5%
3386238 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.52 45.0 3.48e-01 95.1% 80.9%
3388060 5084.1.1.10 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl 0.51 35.0 3.24e-01 70.4% 93.1%
4437932 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.51 44.0 3.33e-01 93.0% 73.0%
3165307 5084.5.4.1 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › Toluene_X 0.50 45.0 3.24e-01 100.0% 48.4%
4976957 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.50 32.0 2.89e-01 88.7% 46.1%
D2 medium residues 1-62_670-702_717-750
PDB
D3 medium residues 63-77_79-89_361-465_620-669
PDB
Domain cluster: representative
D4 medium residues 93-191
PDB
Domain cluster: representative
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4990492 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 26.0 3.69e-01 90.9% 76.0%
3357481 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.56 48.0 3.06e-01 98.0% 34.7%
3431928 10.1.1.2 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.54 48.0 3.96e-01 100.0% 72.4%
3784283 319.1.1.6 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › Pih1_fungal_CS 0.53 34.0 3.71e-01 73.7% 77.1%
3184015 10.1.1.22 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › DUF1349 0.52 45.0 3.55e-01 100.0% 87.6%
3697999 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 42.0 3.16e-01 88.9% 71.8%