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NC_048639.1__YP_009830632.1__HWA94_gp56__00061

Bact-Vir

NC_048639.1__YP_009830632.1__HWA94_gp56__00061

Identity

Accession:
NC_048639 ↗
Kingdom:
phage

Quality

90.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-58
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.70 58.0 5.85e-01 98.0% 96.0%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.69 58.0 5.21e-01 100.0% 76.3%
1s4dE02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.63 47.0 3.55e-01 100.0% 30.9%
1xreA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.63 44.0 3.53e-01 100.0% 34.8%
2qsdA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.63 52.0 4.81e-01 96.1% 80.6%
2wyqA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.61 51.0 4.58e-01 100.0% 85.7%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.61 49.0 4.05e-01 100.0% 57.8%
4ffkA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.60 43.0 3.39e-01 100.0% 33.3%
6mv2A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 48.0 3.96e-01 100.0% 67.6%
5u55A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 42.0 3.30e-01 100.0% 34.4%
2nmlA00 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.58 46.0 3.93e-01 100.0% 71.0%
1j5yA02 3.30.1340.20 Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › 3H domain 0.57 47.0 3.84e-01 100.0% 52.3%
3besR02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 45.0 3.62e-01 100.0% 43.2%
4issA03 3.10.490.10 Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like 0.56 48.0 3.55e-01 98.0% 63.5%
3hvnA01 3.90.840.10 Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain 0.56 44.0 3.28e-01 100.0% 37.8%
7kx7A03 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.56 43.0 3.07e-01 100.0% 90.2%
3r5lA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 44.0 3.63e-01 100.0% 50.0%
8bs9A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.55 43.0 2.73e-01 90.2% 42.3%
2i44B00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.55 45.0 2.88e-01 100.0% 28.5%
3djcB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 42.0 3.78e-01 98.0% 63.6%
3ty4B00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.54 45.0 2.74e-01 94.1% 94.1%
8b4hA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.54 41.0 3.09e-01 94.1% 59.9%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.54 45.0 3.84e-01 100.0% 55.4%
4fgoA00 3.10.620.30 Alpha Beta › Roll › C8orf32 fold › 0.54 43.0 3.14e-01 100.0% 32.0%
3buxB03 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.54 38.0 3.37e-01 88.2% 47.7%
3q8pB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.54 41.0 3.54e-01 100.0% 61.1%
1nqjB00 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.53 39.0 3.18e-01 100.0% 37.7%
4bgjA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 40.0 3.19e-01 86.3% 58.5%
1tdqA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 42.0 3.64e-01 100.0% 54.4%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.53 43.0 3.17e-01 100.0% 30.5%
2mraA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.53 42.0 3.43e-01 100.0% 51.3%
5cvmA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.52 41.0 2.62e-01 92.2% 41.9%
2y27B01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.52 36.0 2.30e-01 76.5% 67.4%
3ihlB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 40.0 2.75e-01 92.2% 72.5%
1ltlA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.52 40.0 4.10e-01 100.0% 98.0%
5hmaA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 41.0 3.48e-01 100.0% 53.8%
4n0rA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 39.0 3.44e-01 100.0% 54.1%
4ca1B02 2.60.210.10 Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 0.51 42.0 3.26e-01 100.0% 46.2%
4d4iA01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.51 37.0 2.29e-01 86.3% 13.7%
6ulwA01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.51 37.0 2.33e-01 86.3% 14.7%
2o6cA00 2.60.40.2480 Mainly Beta › Sandwich › Immunoglobulin-like › Periplasmic metal-binding protein Tp34-type 0.51 42.0 3.10e-01 100.0% 32.9%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5080205 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.76 63.0 6.39e-01 100.0% 96.0%
4995671 3115.1.1.12 a+b two layers › GP2-like › RplX-like › RplX-like › PF30567 0.73 59.0 6.04e-01 100.0% 94.0%
3941732 3115.6.1.0 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon 0.73 60.0 6.11e-01 100.0% 94.0%
4013514 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.72 63.0 4.96e-01 100.0% 55.2%
4937773 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.71 61.0 5.90e-01 98.0% 98.3%
4463006 3115.2.1.0 a+b two layers › GP2-like › GP2 › GP2 0.70 54.0 5.70e-01 92.2% 97.8%
5015713 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.69 59.0 5.66e-01 96.1% 98.3%
4995672 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.69 55.0 5.62e-01 100.0% 94.0%
4967222 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.68 59.0 5.63e-01 100.0% 96.7%
5074648 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.68 59.0 5.26e-01 100.0% 77.3%
4004704 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.68 54.0 5.65e-01 98.0% 100.0%
4969863 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.67 58.0 5.17e-01 100.0% 77.3%
3968122 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.67 52.0 5.48e-01 98.0% 97.8%
4160542 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.67 57.0 5.51e-01 98.0% 98.3%
3969006 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.66 50.0 5.23e-01 100.0% 100.0%
3216210 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.65 53.0 5.41e-01 100.0% 100.0%
5011747 302.4.1.0 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.64 52.0 4.43e-01 100.0% 54.4%
3672413 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 49.0 4.11e-01 86.3% 91.1%
5081134 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.62 50.0 4.86e-01 98.0% 81.7%
3738589 302.4.1.0 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.62 52.0 4.24e-01 100.0% 50.5%
5010624 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 48.0 3.38e-01 100.0% 26.4%
146929 3115.3.1.1 a+b two layers › GP2-like › P56 › P56 › UDG-inhib_P56 0.61 47.0 4.63e-01 100.0% 82.1%
4796557 4012.3.1.0 a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 0.61 51.0 4.86e-01 100.0% 82.5%
3647799 302.4.1.0 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.60 50.0 3.99e-01 100.0% 46.1%
4382285 7527.1.1.1 a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE 0.60 49.0 3.20e-01 94.1% 34.4%
5009745 302.4.1.1 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C 0.60 49.0 3.94e-01 100.0% 50.4%
3798928 59.1.4.2 beta complex topology › triple barrel › triple barrel › TFIID subunits TAF1-TAF7 › DUF3591 0.60 39.0 2.26e-01 98.0% 7.3%
5045852 302.4.1.1 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C 0.60 49.0 3.98e-01 100.0% 51.8%
3742881 228.1.1.1 a+b three layers › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Sod_Fe_C 0.59 48.0 3.76e-01 100.0% 40.0%
3285401 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.59 47.0 4.26e-01 100.0% 65.3%
4945976 302.4.1.1 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C 0.58 47.0 3.78e-01 100.0% 46.7%
4411025 284.1.3.3 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › DUF4346 0.58 48.0 4.28e-01 100.0% 75.0%
3514371 2492.1.1.0 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.58 48.0 3.23e-01 98.0% 66.5%
4964514 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.57 47.0 4.76e-01 96.1% 98.0%
4939155 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.57 45.0 3.65e-01 100.0% 48.7%
5068178 302.4.1.0 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.56 45.0 3.88e-01 100.0% 64.2%
3222162 302.4.1.1 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C 0.56 45.0 3.73e-01 100.0% 55.5%
4231372 4.1.1.307 beta barrels › SH3 › SH3 › SH3 › PF26132 0.56 46.0 4.26e-01 100.0% 98.6%
4147528 4.1.1.307 beta barrels › SH3 › SH3 › SH3 › PF26132 0.56 47.0 4.33e-01 100.0% 98.6%
3923043 4326.1.1.1 a+b two layers › ERH-like › ERH-like › ERH-like › ER 0.56 44.0 3.78e-01 100.0% 73.0%
4448678 4.1.1.307 beta barrels › SH3 › SH3 › SH3 › PF26132 0.55 43.0 4.01e-01 100.0% 98.7%
3256398 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 43.0 3.72e-01 98.0% 54.7%
5049794 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.54 43.0 3.32e-01 100.0% 36.6%
5059050 221.10.1.0 a+b two layers › beta-Grasp › FdhD/NarQ beta-grasp fold domain › FdhD/NarQ beta-grasp fold domain 0.54 43.0 4.11e-01 98.0% 84.6%
4974146 75.1.1.0 beta barrels › Cyclophilin-like › Cyclophilin-like › Cyclophilin-like 0.53 44.0 3.26e-01 100.0% 98.7%
1068675 3714.1.1.0 a+b two layers › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain 0.53 42.0 3.11e-01 100.0% 100.0%
3738951 11.1.1.642 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig-like_Pom152_1 0.53 45.0 3.59e-01 100.0% 58.2%
3970120 323.1.1.0 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.53 39.0 2.80e-01 84.3% 31.1%
3274736 2.2.1.14 beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins › BP74_N 0.52 42.0 3.40e-01 98.0% 99.1%
4890630 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.52 40.0 2.80e-01 100.0% 53.1%
3623139 223.1.1.3 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.52 39.0 2.54e-01 82.4% 16.8%
4027527 929.1.1.0 beta duplicates or obligate multimers › Resistin › Resistin › Resistin 0.52 38.0 3.36e-01 100.0% 51.8%
3606194 323.1.1.0 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.51 35.0 2.38e-01 72.5% 67.9%
4000309 4001.1.1.4 a+b duplicates or obligate multimers › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins › Cullin_AB 0.51 44.0 3.25e-01 100.0% 40.0%
3002594 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.51 37.0 2.68e-01 84.3% 31.3%
4979507 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.51 39.0 3.06e-01 100.0% 35.6%
3304359 304.48.1.70 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Intron_maturas2 0.51 38.0 2.27e-01 86.3% 25.3%