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NC_048640.1__YP_009830680.1__HWA95_gp26__00026

Bact-Vir

NC_048640.1__YP_009830680.1__HWA95_gp26__00026

Identity

Accession:
NC_048640 ↗
Kingdom:
phage

Quality

73.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 64-122
PDB
D2 high residues 131-201
PDB
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3by7E00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.80 69.0 6.75e-01 94.4% 100.0%
2vc8A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.77 58.0 5.84e-01 80.3% 81.9%
4c92G00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.76 59.0 5.80e-01 83.1% 88.0%
1ycyA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.76 51.0 5.44e-01 78.9% 80.6%
2rm4A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.75 57.0 5.86e-01 80.3% 89.4%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.74 48.0 4.25e-01 80.3% 46.1%
1ljoA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.72 57.0 5.60e-01 84.5% 84.0%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.70 44.0 5.07e-01 77.5% 93.8%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.67 44.0 4.94e-01 78.9% 92.3%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 42.0 4.86e-01 77.5% 97.9%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.66 57.0 4.98e-01 98.6% 63.3%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.66 45.0 5.10e-01 76.1% 100.0%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 42.0 4.38e-01 76.1% 74.6%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 47.0 4.46e-01 78.9% 70.2%
3ptaA03 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.63 54.0 4.16e-01 100.0% 64.0%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.62 43.0 4.50e-01 77.5% 78.8%
4n4iA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 51.0 4.70e-01 93.0% 80.0%
3e8lC00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.60 44.0 3.33e-01 78.9% 89.8%
4oddA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 45.0 3.72e-01 95.8% 95.3%
1u17A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 49.0 3.67e-01 100.0% 88.6%
4wfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 45.0 3.69e-01 95.8% 92.2%
4xmeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 48.0 3.64e-01 100.0% 87.5%
1jqlA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.56 37.0 3.18e-01 87.3% 41.2%
3lrrA00 2.170.150.30 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › RIG-I-like receptor, C-terminal regulatory domain 0.55 40.0 3.45e-01 80.3% 78.5%
1e5pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 45.0 3.72e-01 100.0% 95.3%
8t5tA01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.54 47.0 3.52e-01 100.0% 85.9%
4ge6A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.52 38.0 2.56e-01 78.9% 97.0%
1a90A00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 34.0 3.10e-01 70.4% 90.7%
4e1sA00 2.40.160.160 Mainly Beta › Beta Barrel › Porin › Inverse autotransporter, beta-domain 0.51 40.0 2.88e-01 90.1% 95.9%
1hdhA02 3.30.1120.10 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.50 34.0 3.39e-01 87.3% 64.9%
2qf4A02 2.40.10.350 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 2 0.50 45.0 4.12e-01 98.6% 78.0%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4029082 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 48.0 5.63e-01 77.5% 86.0%
4983255 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.79 61.0 5.98e-01 81.7% 84.0%
4532859 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 57.0 6.14e-01 77.5% 95.0%
2167708 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 57.0 5.99e-01 84.5% 86.2%
4147366 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.77 50.0 5.82e-01 80.3% 97.9%
3473732 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 57.0 5.96e-01 80.3% 86.2%
3167351 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.77 59.0 5.47e-01 81.7% 68.2%
4575051 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.77 57.0 5.55e-01 80.3% 73.8%
4954284 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 46.0 4.97e-01 76.1% 71.7%
3602785 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 56.0 5.95e-01 84.5% 91.7%
5069300 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.76 58.0 5.06e-01 81.7% 87.6%
3172870 4.1.1.67 beta barrels › SH3 › SH3 › SH3 › FDF 0.76 55.0 5.02e-01 80.3% 57.9%
3690549 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 60.0 6.10e-01 90.1% 87.1%
5025104 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 49.0 5.62e-01 77.5% 94.0%
4024322 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 56.0 5.58e-01 80.3% 90.7%
4974641 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.75 59.0 6.02e-01 85.9% 91.4%
184917 4.1.1.81 beta barrels › SH3 › SH3 › SH3 › LSM14 0.75 58.0 5.15e-01 83.1% 77.2%
3783301 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 56.0 4.92e-01 80.3% 54.3%
4128902 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 48.0 5.49e-01 78.9% 94.0%
3964733 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 51.0 5.68e-01 88.7% 92.7%
4540843 4.1.1.434 beta barrels › SH3 › SH3 › SH3 › DUF2642 0.74 49.0 5.16e-01 85.9% 75.4%
5060199 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 59.0 5.20e-01 87.3% 87.6%
3784334 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.74 47.0 5.06e-01 76.1% 76.7%
5081091 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 58.0 5.29e-01 85.9% 90.5%
4957350 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 48.0 5.05e-01 83.1% 73.8%
3645922 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.74 55.0 4.37e-01 80.3% 41.4%
5077846 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.74 57.0 5.69e-01 84.5% 81.3%
3786430 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 47.0 5.40e-01 76.1% 92.0%
4024727 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 57.0 5.05e-01 84.5% 67.3%
4191690 4.1.1.98 beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.73 44.0 4.83e-01 76.1% 74.1%
3244451 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.72 54.0 5.02e-01 80.3% 65.6%
4029154 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 60.0 5.02e-01 90.1% 58.0%
3230083 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.72 55.0 5.08e-01 100.0% 64.4%
4368811 4.1.1.364 beta barrels › SH3 › SH3 › SH3 › GatD_N 0.72 50.0 5.53e-01 90.1% 92.7%
3643592 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.72 56.0 5.56e-01 84.5% 81.3%
3387378 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.72 53.0 5.02e-01 78.9% 71.8%
3485965 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 49.0 5.31e-01 81.7% 85.0%
3510526 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 47.0 5.17e-01 77.5% 89.1%
5038431 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 51.0 5.19e-01 77.5% 81.4%
5063433 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 45.0 5.11e-01 80.3% 94.0%
3725139 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 61.0 5.98e-01 97.2% 90.7%
4949848 4.1.1.364 beta barrels › SH3 › SH3 › SH3 › GatD_N 0.69 45.0 4.97e-01 84.5% 85.5%
3586953 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 50.0 5.24e-01 77.5% 84.6%
3965254 4.1.1.222 beta barrels › SH3 › SH3 › SH3 › DUF6948 0.68 59.0 5.41e-01 98.6% 93.7%
3551576 4.1.1.226 beta barrels › SH3 › SH3 › SH3 › KDM3B_Tudor 0.68 49.0 4.85e-01 80.3% 72.0%
3706101 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 59.0 4.19e-01 95.8% 40.5%
3451171 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 47.0 4.92e-01 80.3% 80.0%
5003274 4.1.1.222 beta barrels › SH3 › SH3 › SH3 › DUF6948 0.67 57.0 5.35e-01 98.6% 98.9%
5022491 4.1.1.182 beta barrels › SH3 › SH3 › SH3 › DUF2097 0.67 50.0 4.72e-01 80.3% 70.6%
3387532 3523.1.1.1 beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptF_LptG 0.66 47.0 4.21e-01 74.6% 69.0%
4078260 4.1.1.52 beta barrels › SH3 › SH3 › SH3 › ZapC_C 0.66 50.0 4.65e-01 81.7% 66.7%
552 4.1.1.61 beta barrels › SH3 › SH3 › SH3 › KapB 0.66 57.0 4.98e-01 98.6% 63.3%
4470746 4.1.1.61 beta barrels › SH3 › SH3 › SH3 › KapB 0.66 58.0 4.86e-01 98.6% 70.0%
3601070 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 47.0 4.89e-01 76.1% 92.3%
4033182 4.1.1.61 beta barrels › SH3 › SH3 › SH3 › KapB 0.62 53.0 4.55e-01 98.6% 97.5%
5017161 4.1.1.182 beta barrels › SH3 › SH3 › SH3 › DUF2097 0.62 48.0 4.57e-01 84.5% 70.6%
2137682 1.1.5.32 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZNR 0.61 46.0 4.08e-01 80.3% 57.8%
3721314 219.1.1.93 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6540 0.61 50.0 4.33e-01 94.4% 92.2%
3313139 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.60 51.0 3.82e-01 93.0% 56.0%
4125269 2005.1.1.17 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f 0.60 43.0 2.88e-01 77.5% 20.3%
135832 6.1.1.2 beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Kunitz_legume 0.60 44.0 3.33e-01 78.9% 89.8%
3231154 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 48.0 4.67e-01 91.5% 81.2%
3669494 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.58 48.0 3.78e-01 91.5% 78.7%
3877582 5.1.3.9 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › OLF 0.57 43.0 2.94e-01 83.1% 87.6%
3940715 2484.5.1.2 mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.54 43.0 3.60e-01 91.5% 91.9%
3586034 274.1.1.38 a+b two layers › Pili subunits › Pili subunits › Pili subunits › Pecanex_C 0.54 47.0 3.34e-01 100.0% 70.2%
4207502 274.1.1.38 a+b two layers › Pili subunits › Pili subunits › Pili subunits › Pecanex_C 0.53 46.0 3.45e-01 100.0% 78.8%
4664499 5.1.3.9 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › OLF 0.52 38.0 2.63e-01 80.3% 82.7%
3935844 5.1.3.204 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF7911 0.50 38.0 2.49e-01 81.7% 85.2%
D3 high residues 213-264
PDB
Domain cluster: representative
CATH (75)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lx7A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.85 69.0 7.32e-01 100.0% 97.8%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.83 71.0 6.52e-01 92.3% 92.4%
2ckkA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.82 70.0 6.81e-01 92.3% 93.0%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 63.0 6.26e-01 90.4% 98.1%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 65.0 6.22e-01 94.2% 96.7%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 69.0 6.45e-01 100.0% 96.9%
2kdsA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.76 66.0 5.61e-01 98.1% 62.8%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 68.0 6.02e-01 100.0% 90.5%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 61.0 6.02e-01 90.4% 83.9%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.74 63.0 6.23e-01 92.3% 90.7%
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.74 62.0 5.98e-01 92.3% 87.9%
3pqiA01 2.40.50.230 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Gp5 N-terminal domain 0.70 51.0 4.45e-01 78.8% 100.0%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.70 60.0 5.14e-01 98.1% 66.3%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 56.0 4.90e-01 94.2% 69.0%
6bogA02 2.30.30.930 Mainly Beta › Roll › SH3 type barrels. › 0.68 59.0 5.70e-01 100.0% 93.3%
1fhoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 55.0 4.38e-01 100.0% 66.4%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.66 48.0 3.82e-01 76.9% 75.0%
3b79A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.64 54.0 4.19e-01 100.0% 44.0%
2czoA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.63 46.0 3.51e-01 78.8% 72.3%
2jzkA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.63 47.0 3.89e-01 84.6% 75.7%
3plsA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.63 45.0 3.74e-01 80.8% 78.8%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.63 50.0 4.30e-01 96.2% 66.7%
4mjgA00 3.30.2030.30 Alpha Beta › 2-Layer Sandwich › TBP-like › 0.62 50.0 3.51e-01 90.4% 80.8%
3c96A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.62 51.0 3.68e-01 98.1% 53.6%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 43.0 4.46e-01 76.9% 79.6%
5yjwA00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.62 52.0 3.11e-01 100.0% 35.2%
2jzlA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.62 45.0 3.67e-01 82.7% 78.4%
1xdiA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 50.0 3.42e-01 96.2% 76.1%
1noyA01 3.30.342.10 Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1 0.60 45.0 3.45e-01 84.6% 94.8%
2x45A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 50.0 3.72e-01 96.2% 63.2%
2gu3A01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 44.0 4.19e-01 82.7% 76.9%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.60 45.0 4.16e-01 84.6% 77.5%
1gd5A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.60 43.0 3.29e-01 76.9% 72.3%
3ic9A03 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 48.0 3.75e-01 92.3% 95.9%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.60 44.0 4.09e-01 80.8% 64.2%
1tzdA00 3.30.470.160 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Inositol polyphosphate kinase 0.60 41.0 2.72e-01 73.1% 82.3%
4glaC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 45.0 3.96e-01 90.4% 95.5%
3oblA00 2.40.128.450 Mainly Beta › Beta Barrel › Lipocalin › 0.59 48.0 3.70e-01 96.2% 78.8%
3l8kA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 46.0 3.66e-01 92.3% 94.4%
3jcuB02 3.10.680.10 Alpha Beta › Roll › Photosystem II CP47 reaction center protein › Photosystem II CP47 reaction center protein 0.59 51.0 3.58e-01 100.0% 50.3%
6htnA01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.59 44.0 3.33e-01 82.7% 61.3%
3u2gA02 2.60.98.40 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › DU1608 C-terminal domain 0.59 47.0 3.57e-01 90.4% 69.0%
3nixB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 46.0 2.82e-01 94.2% 40.0%
1n02A00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.59 44.0 3.59e-01 82.7% 74.5%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.59 46.0 4.08e-01 90.4% 61.3%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 46.0 4.51e-01 86.5% 82.1%
3obyA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.58 46.0 3.84e-01 98.1% 53.2%
1reoA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 44.0 3.44e-01 96.2% 68.9%
6aonA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 45.0 3.58e-01 92.3% 98.4%
1ci3M02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.57 44.0 4.31e-01 86.5% 81.0%
2af5A01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.57 43.0 4.29e-01 84.6% 81.5%
1ospO01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.57 43.0 3.52e-01 86.5% 41.9%
4l8hB00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.57 42.0 3.29e-01 82.7% 51.2%
7kcgA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.57 41.0 3.21e-01 82.7% 67.7%
3s27B01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 41.0 3.18e-01 82.7% 42.9%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.56 41.0 3.83e-01 82.7% 81.7%
3e5dA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.56 38.0 3.00e-01 71.2% 36.0%
1uwyA02 2.60.40.1120 Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain 0.56 41.0 3.41e-01 80.8% 78.4%
1ri6A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 46.0 2.90e-01 100.0% 86.5%
3f1sA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.56 41.0 3.10e-01 84.6% 69.3%
4a27A01 3.90.180.10 Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain 0.56 44.0 3.25e-01 92.3% 61.4%
1lomA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.55 38.0 3.16e-01 73.1% 40.6%
2aujD03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.55 42.0 4.02e-01 88.5% 74.2%
1ykdB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.55 45.0 3.22e-01 100.0% 78.1%
2rk0A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.54 39.0 3.09e-01 78.8% 83.5%
1kutA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.54 42.0 3.31e-01 94.2% 85.0%
3bwsA01 2.60.40.3070 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 39.0 3.48e-01 82.7% 83.3%
7jooC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 36.0 3.01e-01 71.2% 100.0%
5inwA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.53 39.0 3.21e-01 84.6% 62.0%
2y1sA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.52 43.0 3.49e-01 96.2% 65.7%
1hp7A01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.52 37.0 3.18e-01 80.8% 69.5%
7ob9B01 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.52 42.0 2.97e-01 98.1% 93.8%
2xcmC00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 39.0 3.35e-01 88.5% 71.7%
3vcxA02 3.30.720.110 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.51 32.0 3.27e-01 71.2% 64.2%
2o62A01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 42.0 3.26e-01 100.0% 67.9%
ECOD (85)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3623785 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.86 74.0 6.47e-01 92.3% 81.3%
3583296 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.84 77.0 6.93e-01 100.0% 95.7%
3932484 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.83 70.0 6.46e-01 90.4% 89.1%
3926118 4.1.1.223 beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.83 68.0 6.43e-01 88.5% 88.3%
4000858 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.82 69.0 6.17e-01 90.4% 88.6%
4218488 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.82 71.0 6.07e-01 94.2% 77.5%
3487837 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.82 70.0 4.63e-01 94.2% 32.0%
3578208 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 68.0 6.71e-01 90.4% 89.1%
3480200 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.81 67.0 5.91e-01 90.4% 97.3%
3928430 4.1.1.223 beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.80 65.0 5.88e-01 88.5% 78.6%
3631298 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.80 70.0 6.09e-01 94.2% 82.7%
3301015 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 68.0 6.31e-01 94.2% 90.8%
3448975 4.1.1.66 beta barrels › SH3 › SH3 › SH3 › LBR_tudor 0.80 67.0 6.27e-01 94.2% 90.8%
3942573 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 71.0 6.86e-01 98.1% 96.6%
3395150 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 67.0 6.41e-01 92.3% 86.7%
3252839 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 72.0 6.29e-01 100.0% 86.7%
4022025 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.79 71.0 5.07e-01 100.0% 46.2%
3566631 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.79 71.0 6.03e-01 98.1% 80.0%
3482680 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 71.0 6.59e-01 100.0% 96.9%
3482225 4.1.1.300 beta barrels › SH3 › SH3 › SH3 › KN17_SH3, SH3_KIN17_C 0.78 69.0 5.02e-01 96.2% 83.8%
3982999 4.1.1.60 beta barrels › SH3 › SH3 › SH3 › YccV-like 0.78 70.0 5.55e-01 98.1% 86.0%
3174977 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.78 72.0 5.78e-01 100.0% 82.1%
3482646 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 71.0 4.66e-01 100.0% 32.0%
3703970 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 68.0 5.43e-01 100.0% 73.3%
3333322 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.77 68.0 4.97e-01 98.1% 45.2%
3217772 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 65.0 5.49e-01 94.2% 85.9%
3702154 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 63.0 5.58e-01 92.3% 69.3%
4071917 4.1.1.111 beta barrels › SH3 › SH3 › SH3 › Tudor_RapA 0.75 59.0 6.06e-01 90.4% 90.0%
3704305 4.1.1.344 beta barrels › SH3 › SH3 › SH3 › PF31193 0.73 60.0 5.54e-01 96.2% 78.6%
4832974 4.1.1.15 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L6e 0.73 59.0 5.49e-01 88.5% 71.9%
4026408 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.72 61.0 5.03e-01 100.0% 58.0%
3479042 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 54.0 5.01e-01 88.5% 82.9%
4284709 4.1.1.111 beta barrels › SH3 › SH3 › SH3 › Tudor_RapA 0.70 63.0 6.19e-01 100.0% 94.5%
3282644 2.24.1.2 beta barrels › OB-fold › probable receptor YhhM › probable receptor YhhM › DUF7489 0.70 53.0 4.89e-01 80.8% 96.9%
3782999 219.1.1.115 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › AIM3_BBC1_C 0.70 61.0 4.45e-01 100.0% 51.7%
3187350 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 56.0 5.29e-01 96.2% 92.3%
3946297 4.1.1.111 beta barrels › SH3 › SH3 › SH3 › Tudor_RapA 0.67 58.0 5.33e-01 100.0% 78.6%
3743614 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.67 57.0 5.54e-01 100.0% 95.0%
4031151 4056.1.1.0 beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.66 55.0 4.99e-01 100.0% 97.3%
3959531 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 51.0 4.80e-01 94.2% 78.6%
4091216 3844.2.1.2 a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › DUF5081 0.64 56.0 3.75e-01 100.0% 48.3%
5051694 218.4.1.1 a+b two layers › Enolase-N/ribosomal protein › Dhaf4260 N-terminal domain › Dhaf4260 N-terminal domain › DUF4213 0.64 45.0 3.57e-01 75.0% 84.5%
3214705 277.1.1.0 a+b two layers › PX domain › PX domain › PX domain 0.62 44.0 3.48e-01 78.8% 68.3%
4201328 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.61 44.0 3.62e-01 76.9% 47.4%
4966092 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.61 46.0 3.59e-01 84.6% 39.5%
3967128 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.61 45.0 4.22e-01 84.6% 71.4%
5044391 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 45.0 4.57e-01 80.8% 100.0%
4311691 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.61 46.0 3.53e-01 86.5% 40.0%
9275 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.61 47.0 3.51e-01 90.4% 90.9%
4594302 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.60 47.0 3.73e-01 88.5% 46.1%
3221538 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 45.0 2.76e-01 84.6% 29.4%
3733607 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.60 48.0 2.86e-01 98.1% 67.1%
3839768 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.60 43.0 2.69e-01 80.8% 65.7%
3716329 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.59 48.0 3.43e-01 92.3% 87.9%
4127839 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.59 45.0 4.04e-01 84.6% 62.7%
3970949 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.59 45.0 3.56e-01 84.6% 39.1%
4107506 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.59 45.0 4.27e-01 86.5% 72.3%
4058734 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.59 41.0 3.45e-01 75.0% 46.3%
4405947 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.58 42.0 3.43e-01 76.9% 45.0%
4069377 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.58 42.0 3.52e-01 78.8% 51.6%
3737837 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 45.0 4.22e-01 86.5% 81.5%
4072334 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.58 40.0 3.28e-01 73.1% 87.0%
3964664 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.58 45.0 4.27e-01 92.3% 73.5%
4073485 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.58 41.0 3.36e-01 78.8% 44.8%
4232558 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.57 41.0 3.42e-01 78.8% 47.0%
4129953 325.1.7.3 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C 0.57 43.0 4.15e-01 88.5% 73.8%
4159666 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.57 43.0 3.52e-01 86.5% 43.1%
4927967 2003.1.2.297 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_dim 0.57 43.0 2.64e-01 90.4% 23.4%
3919588 10.13.1.0 beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A 0.56 45.0 3.43e-01 92.3% 86.7%
4304579 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.56 41.0 3.93e-01 84.6% 73.8%
4049598 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.56 40.0 3.31e-01 78.8% 47.0%
3606311 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 41.0 3.75e-01 82.7% 84.0%
4024730 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.55 41.0 3.60e-01 84.6% 80.0%
4068978 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.55 41.0 3.80e-01 88.5% 64.0%
3970503 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.55 42.0 3.30e-01 88.5% 46.5%
4183857 325.1.7.30 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Peptidase_M23 0.55 42.0 3.82e-01 86.5% 62.7%
4237578 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.55 42.0 3.35e-01 88.5% 42.5%
5043037 5090.1.1.0 beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.55 42.0 3.59e-01 92.3% 87.0%
4391061 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.54 42.0 3.33e-01 88.5% 43.3%
3988584 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.54 41.0 3.49e-01 88.5% 53.0%
4408024 325.1.7.3 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C 0.54 39.0 3.89e-01 88.5% 78.3%
4211209 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.53 40.0 3.82e-01 88.5% 73.8%
3600469 10.13.1.0 beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A 0.53 41.0 3.03e-01 90.4% 92.6%
4984579 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.51 40.0 2.41e-01 94.2% 39.4%
3255946 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 40.0 3.63e-01 96.2% 88.7%
D4 medium residues 1-59
PDB