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NC_048641.1__YP_009830776.1__HWA96_gp47__00047
Bact-VirNC_048641.1__YP_009830776.1__HWA96_gp47__00047
Identity
- Accession:
- NC_048641 ↗
- Kingdom:
- phage
Quality
81.8
mean pLDDT
Taxonomy
TaxID: 1868598
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-48
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1c0gA03 | 3.90.640.10 | Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 | 0.61 | 49.0 | 4.19e-01 | 100.0% | 83.7% |
| 2xzm901 | 6.20.50.180 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.60 | 40.0 | 3.59e-01 | 87.5% | 45.8% |
| 1jj2Y00 | 2.20.25.30 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.60 | 45.0 | 4.03e-01 | 100.0% | 56.2% |
| 5oesA04 | 3.40.50.1760 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glutathione synthase, substrate-binding domain superfamily, eukaryotic | 0.60 | 48.0 | 3.68e-01 | 93.8% | 78.2% |
| 2i50A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.57 | 42.0 | 3.24e-01 | 83.3% | 95.1% |
| 2nqlA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.57 | 36.0 | 2.53e-01 | 83.3% | 17.3% |
| 3zvqA00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.57 | 34.0 | 3.09e-01 | 70.8% | 41.4% |
| 5lohA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.56 | 43.0 | 3.01e-01 | 87.5% | 87.5% |
| 7o06C01 | 3.30.1470.10 | Alpha Beta › 2-Layer Sandwich › Photosystem 1 Reaction Centre Subunit Ii; Chain: D; › Photosystem I PsaD, reaction center subunit II | 0.55 | 37.0 | 3.05e-01 | 70.8% | 41.8% |
| 4nozB01 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.55 | 35.0 | 3.48e-01 | 70.8% | 59.3% |
| 1u7pD00 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.53 | 41.0 | 2.96e-01 | 97.9% | 27.3% |
| 2e5aA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.51 | 39.0 | 2.69e-01 | 97.9% | 44.1% |
| 3jygA00 | 3.30.479.10 | Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD | 0.51 | 39.0 | 2.83e-01 | 95.8% | 32.8% |
| 7s3lA01 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.50 | 40.0 | 2.81e-01 | 91.7% | 71.5% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3880852 | 386.1.1.18 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_jaz | 0.72 | 41.0 | 4.25e-01 | 91.7% | 57.8% |
| 4187442 | 375.1.1.76 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-RRN7 | 0.68 | 44.0 | 4.90e-01 | 85.4% | 91.4% |
| 4025814 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.65 | 46.0 | 4.85e-01 | 91.7% | 90.0% |
| 3610060 | 386.1.1.20 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met | 0.64 | 40.0 | 3.31e-01 | 85.4% | 36.5% |
| 3707297 | 386.1.1.20 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met | 0.63 | 40.0 | 3.84e-01 | 85.4% | 56.4% |
| 3232349 | 708.1.2.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like | 0.62 | 50.0 | 3.94e-01 | 91.7% | 70.2% |
| 2391719 | 386.1.1.20 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met | 0.62 | 41.0 | 3.24e-01 | 85.4% | 35.5% |
| 3778945 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.61 | 42.0 | 3.24e-01 | 72.9% | 89.5% |
| 5010104 | 231.1.2.5 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › MoCoBD_1 | 0.60 | 42.0 | 2.41e-01 | 100.0% | 6.5% |
| 1949611 | 375.1.1.13 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_L37ae | 0.60 | 45.0 | 3.80e-01 | 100.0% | 45.1% |
| 4943173 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 40.0 | 4.10e-01 | 72.9% | 77.8% |
| 3894682 | 386.1.1.242 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2, zf-C2H2_16 | 0.58 | 37.0 | 3.32e-01 | 85.4% | 44.3% |
| 4459217 | 386.1.1.70 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-SCNM1 | 0.58 | 38.0 | 3.79e-01 | 91.7% | 64.0% |
| 3794432 | 5050.1.1.1 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr | 0.57 | 50.0 | 2.85e-01 | 100.0% | 68.7% |
| 3410458 | 375.1.1.26 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 | 0.56 | 45.0 | 3.65e-01 | 100.0% | 44.2% |
| 2391815 | 378.1.1.9 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 | 0.54 | 44.0 | 3.27e-01 | 89.6% | 63.9% |
| 3397638 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.53 | 41.0 | 3.27e-01 | 100.0% | 85.6% |
| 3170313 | 7577.1.1.1 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2 | 0.51 | 43.0 | 2.53e-01 | 100.0% | 40.6% |
| 3266263 | 376.1.6.2 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR_1 | 0.51 | 33.0 | 3.29e-01 | 91.7% | 62.0% |
| 3248868 | 376.1.1.5 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP | 0.50 | 41.0 | 3.29e-01 | 93.8% | 88.0% |
| 3822867 | 376.1.6.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR | 0.50 | 32.0 | 3.31e-01 | 89.6% | 68.9% |
| 3378160 | 3753.1.1.0 ↗ | few secondary structure elements › hypothetical protein NE1300 › hypothetical protein NE1300 › hypothetical protein NE1300 | 0.50 | 39.0 | 3.76e-01 | 85.4% | 77.2% |