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NC_048672.1__YP_009834245.1__HWB27_gp03__00003

Bact-Vir

NC_048672.1__YP_009834245.1__HWB27_gp03__00003

Identity

Accession:
NC_048672 ↗
Kingdom:
phage

Quality

94.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Zobellviridae› Siovirus› Lentibacter_phage_vB_LenP_ICBM1

TaxID: 2847822

Cluster

View cluster (20 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-126
PDB
Domain cluster: rep: NC_028850.1__YP_009203163.1__AVU16_gp07__00007__D5-127
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23780.2 best S-AdoMet_lyase 28.2 2.20e-06 96.8% 88.7%
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4mzyA01 3.20.140.10 Alpha Beta › Alpha-Beta Barrel › nicotinate phosphoribosyltransferase › nicotinate phosphoribosyltransferase 0.57 50.0 3.79e-01 100.0% 83.3%
6w72A01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 49.0 4.83e-01 97.6% 97.7%
1i99I02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.54 26.0 2.73e-01 100.0% 45.3%
3pimB00 3.30.1060.10 Alpha Beta › 2-Layer Sandwich › Peptide Methionine Sulfoxide Reductase; Chain A › Peptide methionine sulphoxide reductase MsrA 0.53 47.0 4.16e-01 97.6% 76.3%
4pvkA03 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.53 36.0 3.24e-01 70.7% 52.5%
2k3iA01 3.30.70.860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 34.0 3.96e-01 74.8% 95.3%
3rjuA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 38.0 2.79e-01 79.7% 78.1%
1iujA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 39.0 4.20e-01 95.9% 97.1%
3wwxA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.50 38.0 2.81e-01 80.5% 82.4%
2kcuA00 3.20.80.10 Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain 0.50 45.0 4.07e-01 100.0% 82.5%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5077796 304.104.1.1 ↗ a+b two layers › Alpha-beta plaits › Sulfolobus fructose-1,6-bisphosphatase-like › Sulfolobus fructose-1,6-bisphosphatase-like › FBPase_3 0.65 58.0 4.17e-01 98.4% 84.9%
4173640 304.55.1.27 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Phage_GPA 0.57 49.0 3.84e-01 95.9% 61.8%
4170426 304.8.1.70 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Phage_GPA 0.57 49.0 3.79e-01 95.9% 59.6%
4511949 304.48.1.74 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Phage_GPA 0.56 49.0 3.98e-01 95.9% 70.8%
3971399 2002.5.1.1 ↗ a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.56 41.0 3.28e-01 76.4% 89.2%
4943702 325.1.4.7 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Nicotinate/Quinolinate PRTase N-terminal domain-like › QRPTase_C 0.55 45.0 4.37e-01 91.9% 77.1%
4203746 71.1.1.3 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.55 38.0 3.38e-01 72.4% 86.3%
3638202 304.6.1.0 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain 0.53 45.0 3.79e-01 98.4% 79.1%
3608278 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 43.0 3.01e-01 95.9% 71.4%