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NC_048672.1__YP_009834284.1__HWB27_gp42__00042
Bact-VirNC_048672.1__YP_009834284.1__HWB27_gp42__00042
Identity
- Accession:
- NC_048672 ↗
- Kingdom:
- phage
Quality
70.7
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Zobellviridae›
Siovirus›
Lentibacter_phage_vB_LenP_ICBM1
TaxID: 2847822
Cluster
View cluster (4 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-100
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3nctA00 | 3.40.50.11880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Plasmid SOS inhibition protein | 0.68 | 51.0 | 4.55e-01 | 78.0% | 63.5% |
| 5mu3B00 | 3.40.50.12050 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.61 | 49.0 | 4.15e-01 | 88.0% | 53.4% |
| 2fp8B00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.59 | 42.0 | 2.99e-01 | 74.0% | 89.1% |
| 2xe4A02 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.59 | 43.0 | 2.97e-01 | 77.0% | 79.3% |
| 2ffgA00 | 3.30.720.20 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 | 0.59 | 40.0 | 4.39e-01 | 71.0% | 98.8% |
| 4eqaC00 | 2.40.128.650 | Mainly Beta › Beta Barrel › Lipocalin › | 0.58 | 41.0 | 3.67e-01 | 75.0% | 99.3% |
| 2ghsA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.57 | 40.0 | 2.90e-01 | 72.0% | 54.6% |
| 2lexA00 | 2.20.25.80 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain | 0.57 | 32.0 | 3.93e-01 | 76.0% | 88.9% |
| 5gv0A00 | 2.40.160.110 | Mainly Beta › Beta Barrel › Porin › | 0.56 | 40.0 | 3.40e-01 | 73.0% | 58.0% |
| 4ozuA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.56 | 40.0 | 2.77e-01 | 74.0% | 84.4% |
| 2aq5A01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.56 | 41.0 | 2.81e-01 | 76.0% | 60.3% |
| 4nkbA01 | 3.30.1120.120 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.56 | 39.0 | 3.72e-01 | 71.0% | 73.7% |
| 3hjhA02 | 3.30.2060.10 | Alpha Beta › 2-Layer Sandwich › Penicillin-binding protein 1b fold › Penicillin-binding protein 1b domain | 0.56 | 35.0 | 3.82e-01 | 71.0% | 75.6% |
| 4akmB00 | 2.40.160.110 | Mainly Beta › Beta Barrel › Porin › | 0.55 | 39.0 | 3.37e-01 | 73.0% | 58.6% |
| 7obmA01 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.55 | 38.0 | 2.66e-01 | 70.0% | 39.3% |
| 1nkgA01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.55 | 41.0 | 3.14e-01 | 81.0% | 94.4% |
| 1q7fB00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.54 | 38.0 | 2.82e-01 | 74.0% | 79.8% |
| 3tc9A02 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.54 | 40.0 | 2.84e-01 | 79.0% | 63.8% |
| 1ijqA01 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.54 | 37.0 | 2.81e-01 | 72.0% | 52.0% |
| 4csdB00 | 2.120.10.70 | Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin | 0.51 | 40.0 | 2.99e-01 | 85.0% | 85.8% |
| 3obaA05 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.51 | 38.0 | 2.72e-01 | 77.0% | 72.7% |
| 6p2lA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 36.0 | 2.60e-01 | 73.0% | 87.4% |
| 3u4yA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 37.0 | 2.62e-01 | 75.0% | 63.6% |
| 4mveA00 | 2.40.128.580 | Mainly Beta › Beta Barrel › Lipocalin › GXWXG domain | 0.51 | 35.0 | 3.16e-01 | 72.0% | 84.4% |
| 1eq6A00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.50 | 39.0 | 3.14e-01 | 82.0% | 46.0% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3259482 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.71 | 49.0 | 5.33e-01 | 71.0% | 88.2% |
| 3217555 | 2484.1.1.200 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH | 0.64 | 42.0 | 3.09e-01 | 72.0% | 25.4% |
| 3226259 | 2484.1.1.200 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH | 0.64 | 42.0 | 3.53e-01 | 72.0% | 39.4% |
| 5016167 | 3504.3.1.1 ↗ | beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N | 0.62 | 38.0 | 3.17e-01 | 71.0% | 35.9% |
| 3783488 | 844.1.1.0 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain | 0.57 | 41.0 | 3.25e-01 | 75.0% | 69.0% |
| 3812869 | 284.1.3.0 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain | 0.56 | 40.0 | 4.09e-01 | 74.0% | 88.0% |
| 3827202 | 5.1.11.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › eIF2A | 0.56 | 40.0 | 3.12e-01 | 74.0% | 49.5% |
| 3645923 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.55 | 38.0 | 2.63e-01 | 72.0% | 28.2% |
| 3217145 | 5.1.4.149 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WDR54 | 0.55 | 39.0 | 2.67e-01 | 73.0% | 76.8% |
| 3263678 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.54 | 40.0 | 2.71e-01 | 77.0% | 93.8% |
| 3781929 | 5.1.4.4 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,DUF1899,WD40_4 | 0.54 | 44.0 | 2.92e-01 | 91.0% | 73.2% |
| 3943583 | 5.1.4.35 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase | 0.53 | 36.0 | 2.47e-01 | 70.0% | 29.9% |
| 3871110 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.53 | 46.0 | 2.73e-01 | 98.0% | 43.4% |
| 4566539 | 5.1.4.4 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,DUF1899,WD40_4 | 0.52 | 43.0 | 2.90e-01 | 91.0% | 85.9% |
| 3783703 | 5.1.3.23 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL | 0.52 | 36.0 | 2.50e-01 | 70.0% | 35.2% |
| 1318584 | 5.1.4.418 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Lactonase | 0.52 | 38.0 | 2.63e-01 | 76.0% | 92.2% |
| 3602008 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.52 | 37.0 | 2.19e-01 | 73.0% | 15.9% |
| 4392365 | 5.1.4.35 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase | 0.52 | 36.0 | 2.54e-01 | 72.0% | 40.0% |
| 3215376 | 5.1.4.4 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,DUF1899,WD40_4 | 0.52 | 44.0 | 3.00e-01 | 96.0% | 87.9% |
| 3266155 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.52 | 38.0 | 2.63e-01 | 76.0% | 87.8% |
| 3776727 | 5.1.4.4 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,DUF1899,WD40_4 | 0.52 | 41.0 | 2.71e-01 | 87.0% | 75.9% |
| 3561744 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.52 | 38.0 | 2.64e-01 | 77.0% | 94.9% |
| 3619225 | 708.1.1.16 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC | 0.52 | 35.0 | 2.94e-01 | 70.0% | 52.8% |
| None | — | 0.52 | 38.0 | 2.56e-01 | 77.0% | 96.2% | |
| 3906634 | 5.1.4.382 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, DUF1899, ANAPC4_WD40, WD40_4 | 0.52 | 44.0 | 2.97e-01 | 95.0% | 66.0% |
| 3541838 | 5.1.4.4 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,DUF1899,WD40_4 | 0.52 | 43.0 | 2.58e-01 | 94.0% | 40.9% |
| 3415744 | 5.1.4.420 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_Aladin | 0.51 | 38.0 | 2.58e-01 | 78.0% | 46.8% |
| 3716903 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.51 | 38.0 | 2.61e-01 | 78.0% | 56.4% |
| 3829524 | 5.1.3.139 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Str_synth, SGL, SSL_N | 0.51 | 44.0 | 2.94e-01 | 93.0% | 33.2% |
| 3998243 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.51 | 42.0 | 2.98e-01 | 93.0% | 90.6% |
| 4001579 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.50 | 34.0 | 3.33e-01 | 71.0% | 80.0% |