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NC_048673.1__YP_009834490.1__HWB28_gp190__00190

Bact-Vir

NC_048673.1__YP_009834490.1__HWB28_gp190__00190

Identity

Accession:
NC_048673 ↗
Kingdom:
phage

Quality

90.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-86
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3llkA01 1.20.120.1960 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › QSOX sulfhydryl oxidase domain 0.68 51.0 4.89e-01 83.5% 68.4%
3nvwA02 1.10.150.120 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain 0.55 40.0 4.24e-01 88.2% 90.5%
2kobA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.55 44.0 4.38e-01 92.9% 96.8%
2cfuA01 3.60.15.30 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Metallo-beta-lactamase domain 0.53 38.0 2.60e-01 76.5% 68.3%
8gpsA02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.50 35.0 3.28e-01 72.9% 77.6%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3528137 3636.1.1.0 a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain 0.57 51.0 3.94e-01 100.0% 97.4%
5004908 131.1.1.0 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like 0.56 47.0 3.68e-01 94.1% 74.2%
3940154 2005.1.1.1 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1 0.52 44.0 2.94e-01 97.6% 36.5%
4938495 304.31.2.1 a+b two layers › Alpha-beta plaits › HMG-CoA reductase › Substrate-binding domain of HMG-CoA reductase › HMG-CoA_red 0.51 44.0 3.50e-01 96.5% 80.0%