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NC_048674.1__YP_009834719.1__HWB29_gp017__00017

Bact-Vir

NC_048674.1__YP_009834719.1__HWB29_gp017__00017

Identity

Accession:
NC_048674 ↗
Kingdom:
phage

Quality

83.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Ceceduovirus› Aeromonas_phage_AS-sw

TaxID: 2026113

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-87
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3pmiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 36.0 3.96e-01 100.0% 75.4%
6j5cA02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.57 37.0 3.75e-01 100.0% 67.5%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 35.0 3.85e-01 100.0% 80.3%
3d9wA02 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.56 40.0 3.83e-01 75.6% 96.1%
2h1eA02 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 33.0 3.98e-01 95.3% 94.5%
2ebkA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.54 39.0 3.42e-01 77.9% 50.8%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 36.0 3.89e-01 100.0% 84.7%
2r41A00 3.10.450.150 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein 0.53 41.0 3.94e-01 96.5% 70.9%
3r87A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 46.0 4.02e-01 98.8% 99.2%
2qkdA03 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.51 30.0 3.57e-01 87.2% 94.1%
5klkB01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.51 44.0 3.14e-01 100.0% 55.0%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4047429 3281.1.1.3 ↗ alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M,Proton_antipo_N,Proton_antipo_C 0.59 45.0 2.74e-01 83.7% 38.0%
3408936 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.58 38.0 3.75e-01 79.1% 62.2%
4972821 523.1.1.3 ↗ a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › PF29994 0.58 39.0 3.50e-01 90.7% 49.2%
3335092 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.58 37.0 4.06e-01 72.1% 81.4%
3500942 330.1.1.3 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dicer_dimer 0.57 40.0 3.71e-01 73.3% 79.1%
3274683 2003.1.2.6 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like,NAD_binding_8 0.57 48.0 3.27e-01 94.2% 60.0%
4345080 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.57 36.0 4.03e-01 100.0% 86.2%
2987310 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.57 39.0 3.68e-01 72.1% 58.3%
3510281 246.3.1.4 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos2 0.56 39.0 3.03e-01 72.1% 42.9%
3195479 316.1.1.10 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Nrap 0.56 42.0 3.04e-01 80.2% 54.0%
3723442 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.56 42.0 3.69e-01 80.2% 53.8%
165641 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.52 42.0 3.54e-01 90.7% 52.9%
4020511 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 34.0 2.94e-01 100.0% 40.7%
4027937 10.13.1.0 ↗ beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A 0.52 44.0 3.69e-01 100.0% 92.9%
3270992 216.1.1.3 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.52 39.0 3.40e-01 82.6% 53.6%
4604718 330.6.1.0 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 0.52 36.0 3.60e-01 73.3% 85.6%
3181024 719.1.1.2 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF 0.52 41.0 3.68e-01 89.5% 93.1%
3421658 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.51 36.0 3.64e-01 95.3% 74.1%
3591481 10.13.1.1 ↗ beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A › E1-E2_ATPase 0.51 42.0 3.58e-01 97.7% 77.5%
5046384 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.50 44.0 3.55e-01 100.0% 61.7%
3707346 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 37.0 3.81e-01 98.8% 81.9%