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NC_048674.1__YP_009834793.1__HWB29_gp091__00091

Bact-Vir

NC_048674.1__YP_009834793.1__HWB29_gp091__00091

Identity

Accession:
NC_048674 ↗
Kingdom:
phage

Quality

93.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Ceceduovirus› Aeromonas_phage_AS-sw

TaxID: 2026113

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-74
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h41A03 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.65 54.0 4.61e-01 100.0% 55.6%
6biqC01 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.63 53.0 4.56e-01 97.3% 64.5%
4fdyA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.62 50.0 4.21e-01 100.0% 50.7%
2vldB01 2.70.180.20 Mainly Beta › Distorted Sandwich › Protein Yojf; Chain: A; › 0.61 54.0 4.63e-01 100.0% 94.9%
2z13A00 2.30.29.170 Mainly Beta › Roll › PH-domain like › 0.61 48.0 4.13e-01 86.3% 76.9%
2w7qB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.61 50.0 3.80e-01 91.8% 82.8%
3buuB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.61 50.0 3.63e-01 93.2% 88.2%
4kc7A02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.60 48.0 4.40e-01 89.0% 97.0%
3k8uA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.60 52.0 4.36e-01 100.0% 58.0%
2x8fA02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.59 47.0 4.38e-01 87.7% 96.8%
5h9kA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 48.0 3.79e-01 91.8% 72.7%
2rloA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 44.0 3.74e-01 84.9% 84.4%
2l1tA00 2.30.110.70 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.57 46.0 4.02e-01 93.2% 58.7%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.57 47.0 4.89e-01 94.5% 100.0%
1zvfB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 44.0 3.46e-01 98.6% 38.4%
2qsdA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.57 41.0 4.26e-01 87.7% 83.6%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 42.0 3.87e-01 82.2% 82.0%
4wfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 43.0 3.44e-01 84.9% 92.8%
2lmeA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.56 38.0 3.42e-01 71.2% 54.3%
7emfR01 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.56 43.0 3.33e-01 86.3% 54.9%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.55 40.0 4.26e-01 91.8% 98.3%
1iwmA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.55 43.0 3.33e-01 89.0% 91.0%
1n26A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 38.0 3.80e-01 93.2% 69.2%
2ptfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 43.0 3.52e-01 90.4% 93.2%
4g1vA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 47.0 4.09e-01 100.0% 94.9%
3e0jB00 3.90.1030.20 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain 0.54 47.0 3.74e-01 100.0% 48.3%
2arzA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 40.0 3.22e-01 80.8% 83.3%
2iabA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 38.0 3.15e-01 76.7% 79.7%
3nngA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 44.0 3.59e-01 100.0% 96.7%
1vl7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 38.0 3.20e-01 80.8% 92.6%
4kkdB04 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 40.0 3.42e-01 86.3% 86.3%
2ok7A01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 42.0 3.71e-01 93.2% 99.1%
4ghbA00 2.40.160.190 Mainly Beta › Beta Barrel › Porin › 0.51 40.0 2.81e-01 86.3% 98.8%
4d8mA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 44.0 3.40e-01 97.3% 52.9%
4h3wA02 2.60.120.1260 Mainly Beta › Sandwich › Jelly Rolls › 0.51 45.0 3.54e-01 97.3% 66.4%
4nswA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 42.0 3.74e-01 94.5% 87.2%
4dohB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 44.0 4.21e-01 97.3% 86.4%
2eixA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 41.0 3.66e-01 90.4% 97.2%
2ig6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 36.0 3.01e-01 76.7% 79.7%
5dzeA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 43.0 3.25e-01 100.0% 97.5%
3jvgA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.50 35.0 2.70e-01 72.6% 69.9%
3rwnB00 2.60.120.1120 Mainly Beta › Sandwich › Jelly Rolls › Sf6-type phage tail needle knob 0.50 43.0 3.49e-01 100.0% 91.6%
1xovA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 37.0 3.91e-01 80.8% 93.9%
ECOD (72)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3464137 4.1.1.152 ↗ beta barrels › SH3 › SH3 › SH3 › DUF1262 0.66 56.0 4.36e-01 95.9% 79.4%
4940673 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 49.0 5.34e-01 93.2% 98.3%
4674170 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.64 54.0 4.61e-01 94.5% 61.7%
4668960 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 52.0 4.64e-01 94.5% 66.4%
4476649 219.1.1.8 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.63 53.0 4.41e-01 100.0% 52.6%
3320319 4.1.1.152 ↗ beta barrels › SH3 › SH3 › SH3 › DUF1262 0.63 55.0 4.50e-01 100.0% 58.6%
4607738 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.61 51.0 4.54e-01 94.5% 67.3%
3754872 219.1.1.25 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › LRAT 0.61 52.0 4.49e-01 97.3% 60.8%
4429329 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.61 50.0 5.22e-01 95.9% 100.0%
4625654 4.1.1.445 ↗ beta barrels › SH3 › SH3 › SH3 › Spore_GerQ 0.60 49.0 4.95e-01 93.2% 89.3%
1893314 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.60 52.0 4.45e-01 100.0% 91.3%
4342110 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.60 50.0 5.09e-01 100.0% 93.2%
4069793 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.60 50.0 5.16e-01 98.6% 95.7%
3840585 219.1.1.25 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › LRAT 0.60 52.0 3.93e-01 100.0% 39.5%
4216845 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.60 50.0 5.06e-01 100.0% 93.2%
3632407 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 49.0 4.24e-01 91.8% 84.6%
5000207 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.60 52.0 4.40e-01 100.0% 92.0%
3996204 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 46.0 3.95e-01 84.9% 75.8%
4948685 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.59 51.0 4.43e-01 97.3% 100.0%
4574546 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.59 47.0 4.96e-01 93.2% 100.0%
4497415 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.59 51.0 4.37e-01 100.0% 91.2%
4968082 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.59 52.0 3.78e-01 100.0% 86.0%
4323235 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.59 49.0 4.34e-01 94.5% 82.7%
3712782 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 43.0 4.24e-01 97.3% 72.5%
3875067 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 45.0 3.50e-01 84.9% 50.0%
3602156 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.58 52.0 4.03e-01 100.0% 82.5%
3255850 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 45.0 3.69e-01 84.9% 62.1%
3480564 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 43.0 3.63e-01 84.9% 82.1%
5042597 4.15.1.0 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like 0.57 50.0 4.69e-01 97.3% 96.7%
3587906 4.1.1.46 ↗ beta barrels › SH3 › SH3 › SH3 › VEG 0.57 49.0 4.82e-01 95.9% 98.8%
3251320 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.57 44.0 3.09e-01 86.3% 53.7%
5023972 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 50.0 4.79e-01 100.0% 87.1%
4992755 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.57 49.0 4.66e-01 100.0% 100.0%
3498264 219.1.1.53 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Vasohibin 0.57 50.0 3.46e-01 100.0% 45.9%
5082717 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.56 50.0 3.62e-01 100.0% 76.1%
3925426 220.1.1.176 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7778 0.56 43.0 3.54e-01 84.9% 68.6%
4212091 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.56 43.0 4.56e-01 94.5% 96.9%
3634755 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 43.0 3.65e-01 84.9% 70.4%
3712139 220.1.1.29 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_3 0.55 42.0 3.76e-01 84.9% 71.8%
3520312 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 41.0 4.00e-01 86.3% 71.8%
3916755 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.54 48.0 3.22e-01 100.0% 82.4%
4977424 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.54 48.0 3.74e-01 100.0% 84.4%
4118226 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 43.0 4.42e-01 98.6% 97.1%
3290160 4.1.1.323 ↗ beta barrels › SH3 › SH3 › SH3 › WYL 0.54 45.0 4.43e-01 97.3% 100.0%
4954944 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.54 46.0 3.68e-01 97.3% 93.5%
3390499 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.54 47.0 3.87e-01 100.0% 89.3%
3613893 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.54 42.0 3.80e-01 91.8% 62.0%
4158712 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.54 42.0 4.34e-01 94.5% 91.4%
3268196 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.54 40.0 3.19e-01 79.5% 77.3%
3606467 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 47.0 3.93e-01 100.0% 58.5%
3696482 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 39.0 3.72e-01 90.4% 66.3%
4124780 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.53 42.0 4.26e-01 100.0% 93.2%
3967781 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.53 44.0 3.46e-01 93.2% 49.4%
3387861 5090.1.1.0 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.53 41.0 3.63e-01 89.0% 97.4%
4938263 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.53 44.0 3.84e-01 100.0% 89.6%
4660084 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.52 42.0 4.29e-01 97.3% 98.6%
4963774 1.1.14.2 ↗ beta barrels › cradle loop barrel › RIFT-related › PTS system glucitol/sorbitol-specific IIA component-like › DUF371 0.52 45.0 3.60e-01 94.5% 100.0%
3712567 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 44.0 3.33e-01 97.3% 67.0%
3981111 1.1.7.89 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF26002 0.52 44.0 3.55e-01 100.0% 67.7%
5023750 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.52 44.0 3.77e-01 100.0% 86.4%
4537757 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.51 42.0 3.69e-01 95.9% 88.3%
185765 5084.5.1.13 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › DUF4595 0.51 40.0 2.81e-01 86.3% 98.8%
5057694 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.51 43.0 3.92e-01 95.9% 100.0%
4431786 1.1.5.11 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › UbiD 0.51 42.0 2.98e-01 94.5% 85.2%
4949422 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 45.0 3.91e-01 97.3% 82.7%
4012802 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.51 42.0 3.78e-01 95.9% 98.2%
3275615 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.51 39.0 3.32e-01 93.2% 48.1%
5029583 219.1.1.13 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.51 44.0 3.58e-01 98.6% 93.1%
4463104 1.1.5.11 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › UbiD 0.51 41.0 3.04e-01 94.5% 84.9%
4237287 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.50 40.0 3.44e-01 89.0% 53.3%
4268470 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 43.0 3.86e-01 94.5% 83.0%
3702318 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.50 39.0 2.90e-01 90.4% 78.3%