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NC_048674.1__YP_009834799.1__HWB29_gp097__00097

Bact-Vir

NC_048674.1__YP_009834799.1__HWB29_gp097__00097

Identity

Accession:
NC_048674 ↗
Kingdom:
phage

Quality

93.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Ceceduovirus› Aeromonas_phage_AS-sw

TaxID: 2026113

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-56
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1eqzF00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.73 48.0 3.82e-01 98.1% 33.6%
7tfmA01 1.10.1780.10 Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain 0.73 49.0 3.59e-01 98.1% 26.9%
1khyD00 1.10.1780.10 Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain 0.72 47.0 3.51e-01 98.1% 25.9%
6azyA01 1.10.1780.10 Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain 0.67 45.0 3.39e-01 96.2% 28.2%
4ex8A00 3.40.1790.10 Alpha Beta › 3-Layer(aba) Sandwich › Indigoidine synthase fold › Indigoidine synthase domain 0.65 51.0 3.18e-01 86.5% 36.5%
2ffjA02 1.10.285.20 Mainly Alpha › Orthogonal Bundle › Glutamate Dehydrogenase; Chain A, domain 3 › Uncharacterised protein PF01937, DUF89, domain 2 0.65 42.0 3.96e-01 90.4% 52.3%
1oizA01 1.10.8.20 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p 0.64 47.0 4.33e-01 86.5% 59.7%
2ja2A04 1.10.8.70 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 0.64 46.0 4.66e-01 86.5% 78.8%
7y11B01 1.10.8.20 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › N-terminal domain of phosphatidylinositol transfer protein sec14p 0.63 46.0 4.41e-01 86.5% 66.7%
3nbiA01 1.10.8.1020 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain 0.62 45.0 4.38e-01 78.8% 75.9%
2q00B00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.62 53.0 4.11e-01 100.0% 71.3%
2wdqC00 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.60 43.0 3.31e-01 88.5% 33.1%
2hsbA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.59 49.0 3.73e-01 94.2% 65.9%
1g8pA02 1.10.8.80 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Magnesium chelatase subunit I, C-Terminal domain 0.58 47.0 4.11e-01 90.4% 59.0%
4griA04 1.10.8.70 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 0.56 42.0 4.24e-01 90.4% 84.9%
1u9pA00 1.10.1220.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like 0.56 47.0 3.95e-01 98.1% 61.5%
3cxbA03 1.10.1740.30 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain 0.55 47.0 4.05e-01 94.2% 65.4%
2r18A02 1.10.8.880 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Birnavirus VP3 protein, domain 2 0.55 40.0 3.90e-01 84.6% 69.5%
5dikA00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.55 39.0 3.05e-01 75.0% 42.0%
4gtnA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.55 40.0 3.57e-01 82.7% 55.4%
2be4A01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.54 44.0 3.87e-01 98.1% 60.5%
2vs0A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.54 38.0 3.26e-01 88.5% 47.6%
4eqyA02 1.20.1180.10 Mainly Alpha › Up-down Bundle › Udp N-acetylglucosamine O-acyltransferase; Domain 2 › Udp N-acetylglucosamine O-acyltransferase, C-terminal domain 0.54 37.0 3.41e-01 73.1% 54.3%
2zt5A02 3.30.40.230 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › 0.53 40.0 3.39e-01 80.8% 84.5%
1nklA00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.53 41.0 3.60e-01 88.5% 56.4%
3t38A01 1.10.8.1060 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Corynebacterium glutamicum thioredoxin-dependent arsenate reductase, N-terminal domain 0.53 42.0 3.85e-01 92.3% 70.4%
1ij5A01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 37.0 3.25e-01 100.0% 52.6%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.51 38.0 3.32e-01 96.2% 51.9%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3566658 2006.1.4.33 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › Tim17 0.69 44.0 3.88e-01 100.0% 44.0%
5041642 2004.1.1.196 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_22 0.69 51.0 3.32e-01 80.8% 85.8%
3707358 131.1.1.0 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like 0.68 48.0 3.09e-01 100.0% 16.9%
3552184 1045.1.1.1 ↗ alpha bundles › Rad50-binding domain of Mre11 › Rad50-binding domain of Mre11 › Rad50-binding domain of Mre11 › Mre11_DNA_bind 0.65 55.0 4.47e-01 100.0% 52.4%
3379763 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.64 53.0 4.72e-01 100.0% 62.5%
4967169 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.64 53.0 4.29e-01 94.2% 72.4%
3223469 168.1.1.1 ↗ alpha arrays › Sec7 domain › Sec7 domain › Sec7 domain › Sec7 0.64 42.0 2.85e-01 71.2% 18.5%
3966804 148.1.3.238 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF815 0.63 49.0 4.73e-01 90.4% 76.7%
3627090 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.62 53.0 4.88e-01 100.0% 77.1%
3385513 148.1.3.238 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF815 0.60 40.0 4.07e-01 78.8% 74.0%
3253427 5041.1.1.1 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C 0.59 39.0 3.22e-01 88.5% 39.8%
3539986 5058.1.1.90 ↗ alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › TMEM169 0.59 53.0 4.65e-01 100.0% 68.0%
5049215 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.59 48.0 4.19e-01 100.0% 97.8%
3260418 5043.1.1.0 ↗ extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like 0.58 41.0 3.92e-01 88.5% 63.1%
3214449 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.54 40.0 3.55e-01 80.8% 61.3%
3781350 5041.1.1.20 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › PF26669 0.53 40.0 3.02e-01 94.2% 35.0%
3687749 101.1.1.3 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.51 38.0 3.64e-01 92.3% 70.8%
4051415 5041.1.1.1 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C 0.51 33.0 2.90e-01 100.0% 41.2%
5037396 2003.1.1.22 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GFO_IDH_MocA 0.50 41.0 2.79e-01 100.0% 39.6%