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NC_048674.1__YP_009834815.1__HWB29_gp113__00113

Bact-Vir

NC_048674.1__YP_009834815.1__HWB29_gp113__00113

Identity

Accession:
NC_048674 ↗
Kingdom:
phage

Quality

92.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Ceceduovirus› Aeromonas_phage_AS-sw

TaxID: 2026113

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-72
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3u5wA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 43.0 3.58e-01 75.0% 69.0%
1k5dB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 47.0 3.74e-01 85.3% 64.4%
2ec1A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 47.0 3.98e-01 85.3% 77.1%
1cv8A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.59 50.0 3.84e-01 100.0% 61.3%
2iabA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 42.0 3.34e-01 75.0% 69.2%
4m0wA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.59 45.0 3.70e-01 98.5% 43.1%
6mv2A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 49.0 4.29e-01 95.6% 98.1%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 44.0 3.91e-01 85.3% 78.0%
2w5eA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 37.0 3.60e-01 83.8% 60.8%
2rloA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 44.0 3.61e-01 86.8% 79.7%
3r5lA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 39.0 3.35e-01 75.0% 80.2%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 42.0 3.68e-01 85.3% 83.6%
2ol5A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 40.0 2.96e-01 77.9% 75.4%
3cp3A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 38.0 3.23e-01 75.0% 77.2%
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.54 46.0 4.26e-01 97.1% 94.4%
3tk9A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 39.0 3.45e-01 77.9% 93.5%
1flmA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 38.0 3.19e-01 73.5% 79.5%
2hq9B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 41.0 3.21e-01 86.8% 39.4%
1ntyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 42.0 3.50e-01 86.8% 70.2%
1epaA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 45.0 3.48e-01 95.6% 91.9%
2da0A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 42.0 3.56e-01 86.8% 64.0%
3db0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 36.0 3.11e-01 73.5% 80.6%
5chtB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.53 45.0 3.02e-01 100.0% 30.0%
2ok5A02 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.53 45.0 3.25e-01 100.0% 95.9%
7x4oB01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 35.0 3.08e-01 70.6% 96.4%
4cshA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.52 45.0 3.46e-01 100.0% 48.8%
2y7bA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 40.0 3.27e-01 85.3% 77.6%
5xyib00 2.20.25.100 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Ribosomal protein S27 0.52 38.0 3.59e-01 85.3% 64.6%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.52 42.0 4.10e-01 91.2% 83.1%
2o8lA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 37.0 3.22e-01 73.5% 81.2%
1dleB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 44.0 3.53e-01 97.1% 78.2%
2htiA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 37.0 3.17e-01 79.4% 78.6%
4ybnB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 41.0 2.92e-01 88.2% 28.8%
4odbA00 2.60.90.20 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Virus attachment protein , globular domain 0.51 43.0 3.33e-01 95.6% 56.8%
7oc3A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 43.0 3.98e-01 98.5% 83.7%
2a2jA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 35.0 2.62e-01 73.5% 65.0%
3qkgA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 39.0 3.12e-01 91.2% 73.8%
7ylrA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.50 42.0 3.70e-01 95.6% 98.1%
1darA04 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.50 40.0 3.35e-01 88.2% 90.8%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3320319 4.1.1.152 ↗ beta barrels › SH3 › SH3 › SH3 › DUF1262 0.65 57.0 4.50e-01 98.5% 61.4%
4001211 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 44.0 4.23e-01 85.3% 62.8%
3587863 3158.1.1.1 ↗ beta barrels › uncharacterized protein RUMGNA_01417 › uncharacterized protein RUMGNA_01417 › uncharacterized protein RUMGNA_01417 › DUF5348 0.62 54.0 5.06e-01 98.5% 97.6%
3486847 4.1.1.284 ↗ beta barrels › SH3 › SH3 › SH3 › SBNO 0.61 47.0 4.17e-01 86.8% 65.7%
3283546 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.59 41.0 3.28e-01 73.5% 65.7%
4021140 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 46.0 3.84e-01 85.3% 71.3%
3342167 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 45.0 3.40e-01 85.3% 69.1%
4255584 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.57 50.0 4.46e-01 100.0% 90.0%
3621943 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 44.0 3.62e-01 85.3% 56.2%
5016426 1.1.5.31 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.57 42.0 3.17e-01 77.9% 84.9%
3332690 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.57 50.0 4.43e-01 100.0% 91.0%
3482603 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 44.0 3.91e-01 85.3% 77.0%
3222570 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 44.0 3.75e-01 86.8% 76.5%
3496352 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 49.0 4.12e-01 100.0% 94.2%
3937774 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 44.0 3.59e-01 85.3% 72.8%
4607738 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.56 45.0 3.92e-01 92.6% 66.4%
160843 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 42.0 3.53e-01 85.3% 72.4%
3591998 220.1.1.11 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.55 42.0 3.67e-01 85.3% 77.3%
4019128 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.55 39.0 2.91e-01 76.5% 83.7%
4209798 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.54 46.0 4.31e-01 97.1% 95.3%
4024274 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.54 44.0 3.90e-01 94.1% 68.6%
4516083 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.54 44.0 3.84e-01 94.1% 82.7%
3702149 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 48.0 3.64e-01 100.0% 88.7%
4979014 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.53 42.0 3.39e-01 88.2% 43.7%
4668960 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 43.0 3.76e-01 92.6% 65.5%
3416672 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 45.0 4.08e-01 100.0% 78.0%
5025498 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.53 44.0 4.08e-01 97.1% 97.8%
4545520 4.7.1.7 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › WYL 0.53 45.0 4.18e-01 94.1% 78.8%
3744808 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.53 41.0 3.09e-01 88.2% 37.3%
3781470 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 40.0 3.00e-01 85.3% 44.9%
3611195 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.52 45.0 3.86e-01 97.1% 88.2%
4674170 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.52 42.0 3.59e-01 92.6% 60.8%
3821287 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.52 43.0 3.46e-01 94.1% 50.0%
3953109 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.52 45.0 4.05e-01 97.1% 72.6%
4441129 1.1.7.91 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25940 0.52 43.0 3.63e-01 94.1% 80.0%
3813872 5.1.4.550 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.52 39.0 2.65e-01 85.3% 97.0%
4319764 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.51 43.0 3.71e-01 94.1% 65.5%
3957779 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.51 44.0 3.79e-01 97.1% 87.3%
4004549 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.51 43.0 3.86e-01 95.6% 96.0%
3713334 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.51 41.0 4.29e-01 88.2% 100.0%
5056614 876.1.1.10 ↗ a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › DUF1015 0.51 38.0 2.86e-01 83.8% 97.0%
5010832 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.51 42.0 3.96e-01 97.1% 94.4%
3830978 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.51 43.0 3.63e-01 97.1% 89.2%
4063634 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.51 41.0 3.48e-01 94.1% 58.9%
3423505 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.50 42.0 3.86e-01 98.5% 100.0%
4947401 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.50 41.0 3.13e-01 88.2% 39.4%
4400596 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.50 41.0 3.22e-01 94.1% 44.4%
2978978 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.50 40.0 3.88e-01 86.8% 85.3%
4273561 1.1.7.91 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25940 0.50 41.0 3.37e-01 94.1% 76.3%
3056322 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.50 44.0 3.78e-01 100.0% 96.4%
5051220 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.50 42.0 3.90e-01 98.5% 96.7%
5009312 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 42.0 3.69e-01 100.0% 84.5%
4400460 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.50 40.0 3.19e-01 88.2% 43.6%