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NC_048674.1__YP_009834822.1__HWB29_gp120__00120

Bact-Vir

NC_048674.1__YP_009834822.1__HWB29_gp120__00120

Identity

Accession:
NC_048674 ↗
Kingdom:
phage

Quality

83.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Ceceduovirus› Aeromonas_phage_AS-sw

TaxID: 2026113

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-115
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 39.0 4.84e-01 74.3% 87.5%
2ky9A01 2.30.30.1130 Mainly Beta › Roll › SH3 type barrels. › 0.65 39.0 4.72e-01 70.5% 92.5%
2gs5A01 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.65 48.0 3.94e-01 77.1% 93.6%
3feoB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 40.0 4.47e-01 80.0% 79.5%
2ew0A00 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.64 48.0 4.03e-01 78.1% 100.0%
1wjrA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 42.0 3.96e-01 77.1% 55.1%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 40.0 4.15e-01 80.0% 67.7%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.56 45.0 4.50e-01 93.3% 83.5%
2vobB02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.52 41.0 3.22e-01 81.0% 55.6%
4rg8A02 3.30.1520.20 Alpha Beta › 2-Layer Sandwich › PX Domain › Exonuclease ExoI, domain 2 0.51 37.0 3.46e-01 78.1% 79.3%
4a18O00 3.30.390.110 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.51 42.0 3.87e-01 91.4% 69.4%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3675511 4.1.1.75 ↗ beta barrels › SH3 › SH3 › SH3 › NdhS 0.70 46.0 5.25e-01 77.1% 88.7%
3457106 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.69 42.0 5.19e-01 70.5% 98.5%
3841414 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.68 41.0 4.95e-01 74.3% 90.0%
4451786 4113.1.1.1 ↗ beta barrels › VC0467-like › VC0467-like › VC0467-like › DUF179 0.68 48.0 3.99e-01 72.4% 92.8%
4639593 4113.1.1.1 ↗ beta barrels › VC0467-like › VC0467-like › VC0467-like › DUF179 0.67 49.0 4.08e-01 75.2% 100.0%
3514556 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 39.0 4.74e-01 78.1% 90.0%
3244430 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.66 39.0 4.00e-01 70.5% 60.0%
4217839 4113.1.1.1 ↗ beta barrels › VC0467-like › VC0467-like › VC0467-like › DUF179 0.65 50.0 4.21e-01 81.9% 98.9%
4105718 4113.1.1.1 ↗ beta barrels › VC0467-like › VC0467-like › VC0467-like › DUF179 0.65 50.0 4.14e-01 82.9% 98.4%
3890336 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.64 41.0 3.03e-01 80.0% 24.7%
3494683 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 38.0 4.55e-01 71.4% 90.0%
3709279 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 46.0 4.91e-01 75.2% 92.2%
3619619 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 39.0 4.65e-01 81.9% 94.3%
3333322 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.61 49.0 4.50e-01 85.7% 79.3%
3181990 883.1.1.23 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › HAM1_C, HAM1_N 0.61 43.0 3.27e-01 73.3% 71.6%
3595833 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.61 46.0 4.79e-01 78.1% 90.5%
3342814 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.61 42.0 4.41e-01 70.5% 85.3%
3668420 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.59 44.0 3.58e-01 77.1% 65.8%
3592075 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 43.0 4.67e-01 78.1% 92.9%
3342793 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.59 47.0 3.85e-01 84.8% 70.0%
3356605 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.59 41.0 4.38e-01 71.4% 87.8%
3645395 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.58 40.0 4.53e-01 71.4% 100.0%
3618922 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.57 40.0 4.19e-01 74.3% 90.5%
3922426 4.1.1.363 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet, Tudor_FRX1 0.55 44.0 4.19e-01 84.8% 85.0%
3515143 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.55 39.0 3.68e-01 80.0% 61.6%
3712451 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 45.0 4.26e-01 89.5% 92.8%
3940362 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 37.0 2.86e-01 71.4% 70.7%
3739545 874.1.1.0 ↗ a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain 0.53 44.0 3.04e-01 87.6% 75.2%
1807455 3209.1.1.1 ↗ a+b two layers › RPL28 › RPL28 › RPL28 › Ribosomal_L28e 0.51 42.0 3.87e-01 91.4% 69.4%