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NC_048674.1__YP_009834996.1__HWB29_gp294__00294

Bact-Vir

NC_048674.1__YP_009834996.1__HWB29_gp294__00294

Identity

Accession:
NC_048674 ↗
Kingdom:
phage

Quality

79.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Ceceduovirus› Aeromonas_phage_AS-sw

TaxID: 2026113

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-82
PDB
Domain cluster: representative
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1cv8A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.69 60.0 4.74e-01 100.0% 85.0%
3kbgA03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 42.0 4.85e-01 75.0% 89.3%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.68 52.0 5.36e-01 83.7% 88.3%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 43.0 4.56e-01 80.0% 80.9%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 48.0 4.65e-01 83.7% 73.6%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 47.0 4.89e-01 81.2% 95.8%
3teeA02 2.30.30.760 Mainly Beta › Roll › SH3 type barrels. › 0.60 42.0 4.43e-01 75.0% 80.8%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 46.0 4.87e-01 86.3% 100.0%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.59 37.0 4.02e-01 70.0% 77.3%
3n7cA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 41.0 3.80e-01 75.0% 85.2%
3ethA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.58 42.0 4.58e-01 92.5% 98.4%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 41.0 4.18e-01 73.8% 83.3%
1lr5B00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 41.0 3.29e-01 91.3% 37.7%
1vwxA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 46.0 4.61e-01 90.0% 88.7%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 39.0 4.38e-01 73.8% 91.9%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.56 40.0 3.73e-01 75.0% 81.7%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.56 44.0 3.63e-01 87.5% 47.0%
1m1fB00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.55 39.0 3.61e-01 75.0% 80.0%
2kgtA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 37.0 3.93e-01 71.2% 90.3%
2v9kA04 3.30.70.3190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 40.0 3.73e-01 80.0% 73.4%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 37.0 3.93e-01 70.0% 84.3%
3jcuO01 2.40.160.30 Mainly Beta › Beta Barrel › Porin › Photosystem II, cytochrome c-550 precursor 0.54 42.0 3.29e-01 83.7% 98.3%
1ne8A00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.54 41.0 3.65e-01 82.5% 80.2%
4owpB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.54 40.0 3.27e-01 82.5% 84.9%
1mkeA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 43.0 3.60e-01 90.0% 86.8%
1ze3D00 3.10.20.410 Alpha Beta › Roll › Ubiquitin-like (UB roll) › PapC, N-terminal domain 0.53 39.0 3.53e-01 80.0% 76.7%
1wlfA01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.52 41.0 4.12e-01 87.5% 97.6%
2gk6A02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.52 40.0 4.05e-01 87.5% 100.0%
1wczA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 39.0 3.56e-01 100.0% 58.3%
4b3fX02 2.40.30.270 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.51 41.0 3.91e-01 91.3% 100.0%
2as9B01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 38.0 3.65e-01 100.0% 66.3%
6fu4A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 34.0 2.80e-01 80.0% 34.4%
1t3yA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.50 41.0 3.60e-01 93.8% 88.5%
3v76A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.50 36.0 3.51e-01 82.5% 67.8%
4ehoA04 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 34.0 2.98e-01 71.2% 45.2%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3222614 220.1.1.158 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 0.70 49.0 4.39e-01 73.8% 79.1%
3590468 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 54.0 5.75e-01 85.0% 94.3%
5033672 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.70 61.0 4.66e-01 100.0% 81.5%
3283097 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.67 53.0 4.76e-01 86.3% 65.5%
4625654 4.1.1.445 ↗ beta barrels › SH3 › SH3 › SH3 › Spore_GerQ 0.66 51.0 5.23e-01 82.5% 89.3%
5025498 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.66 54.0 5.24e-01 91.3% 95.6%
3300719 7.1.1.0 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain 0.65 52.0 4.61e-01 88.7% 61.7%
3519897 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 45.0 3.93e-01 75.0% 72.3%
3478983 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 42.0 3.94e-01 70.0% 80.0%
3718060 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 46.0 4.08e-01 77.5% 74.8%
3315951 220.1.1.86 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ZGRF1-like_N 0.63 43.0 4.40e-01 72.5% 96.2%
4251101 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 52.0 5.10e-01 90.0% 90.6%
3926010 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.62 51.0 4.37e-01 91.3% 94.6%
3419158 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.62 47.0 5.13e-01 81.2% 100.0%
3951894 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.62 50.0 4.73e-01 88.7% 98.9%
3740122 220.1.1.92 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Mcp5_PH 0.61 44.0 3.82e-01 77.5% 77.4%
4484974 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 49.0 4.85e-01 87.5% 88.2%
3666672 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 42.0 3.85e-01 72.5% 77.3%
3928136 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 43.0 4.82e-01 80.0% 98.3%
4929323 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 43.0 3.89e-01 73.8% 81.8%
3222210 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.61 48.0 5.11e-01 87.5% 98.6%
4681448 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.60 45.0 3.40e-01 82.5% 82.2%
3843359 4.1.1.246 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_Coilin 0.60 53.0 5.22e-01 100.0% 92.9%
3591144 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.60 48.0 3.98e-01 88.7% 69.3%
3434219 4.25.1.2 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.59 45.0 4.32e-01 83.7% 81.1%
3437523 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.59 42.0 4.40e-01 81.2% 85.7%
3213122 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.59 49.0 4.52e-01 92.5% 90.5%
3936663 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 47.0 4.08e-01 87.5% 100.0%
2664854 4.1.1.38 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C 0.59 46.0 4.30e-01 90.0% 67.6%
3170688 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.59 41.0 4.48e-01 80.0% 98.3%
3619619 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 42.0 4.45e-01 87.5% 85.7%
4459365 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.59 45.0 4.59e-01 90.0% 86.3%
3672735 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.59 42.0 4.55e-01 81.2% 95.4%
3573705 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.58 44.0 3.47e-01 83.7% 81.1%
3540253 4.1.1.78 ↗ beta barrels › SH3 › SH3 › SH3 › TTD 0.58 47.0 4.48e-01 91.3% 83.2%
4250193 4.1.1.78 ↗ beta barrels › SH3 › SH3 › SH3 › TTD 0.58 46.0 4.46e-01 88.7% 84.4%
3974873 219.1.1.35 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › SpvD 0.57 49.0 3.73e-01 100.0% 51.4%
3719783 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 42.0 4.06e-01 80.0% 84.0%
3490032 1.1.7.45 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › eEFSec_4th 0.57 45.0 3.97e-01 88.7% 97.6%
4598590 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.57 40.0 4.23e-01 81.2% 87.1%
3700664 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.56 44.0 4.20e-01 90.0% 99.0%
3630782 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.55 48.0 4.01e-01 98.8% 82.1%
3515762 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.54 40.0 4.12e-01 81.2% 88.0%
1954233 11.21.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein › TSP_Ig-like 0.54 43.0 4.25e-01 90.0% 100.0%
3448643 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.53 45.0 3.48e-01 100.0% 82.4%
3939702 269.1.1.9 ↗ a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › PF29320 0.50 38.0 2.96e-01 82.5% 49.7%
3250040 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 39.0 3.46e-01 91.3% 56.0%