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NC_048674.1__YP_009835080.1__HWB29_gp378__00378

Bact-Vir

NC_048674.1__YP_009835080.1__HWB29_gp378__00378

Identity

Accession:
NC_048674 ↗
Kingdom:
phage

Quality

87.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Ceceduovirus› Aeromonas_phage_AS-sw

TaxID: 2026113

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-89
PDB
Domain cluster: rep: NC_028829.1__YP_009201155.1__AVU32_gp052__00052__D19-85
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 39.0 4.16e-01 87.5% 75.4%
1oxxK02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 33.0 4.04e-01 86.1% 84.4%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 37.0 4.21e-01 91.7% 93.9%
1g29102 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 36.0 4.22e-01 98.6% 100.0%
1aqcB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 42.0 3.61e-01 79.2% 54.1%
2v5gA00 3.40.1690.10 Alpha Beta › 3-Layer(aba) Sandwich › name from scop › secretion proteins EscU 0.57 42.0 3.56e-01 87.5% 46.7%
3t7yA00 3.40.1690.10 Alpha Beta › 3-Layer(aba) Sandwich › name from scop › secretion proteins EscU 0.57 40.0 3.67e-01 88.9% 55.3%
2aujD03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.57 41.0 4.38e-01 100.0% 91.9%
2dfkC02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 49.0 3.95e-01 97.2% 53.9%
1stzA03 3.30.390.60 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Heat-inducible transcription repressor hrca homolog; domain 3 0.56 46.0 4.33e-01 91.7% 86.5%
1ci3M02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.55 40.0 4.33e-01 100.0% 98.3%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.54 38.0 3.96e-01 98.6% 82.1%
6z0wA01 3.40.1690.10 Alpha Beta › 3-Layer(aba) Sandwich › name from scop › secretion proteins EscU 0.54 42.0 3.68e-01 86.1% 86.0%
6az1g01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 45.0 3.03e-01 94.4% 24.6%
4o8uA00 3.30.420.440 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF4152 0.54 42.0 3.09e-01 90.3% 95.6%
1y4wA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 46.0 3.01e-01 100.0% 96.9%
3qijB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 42.0 3.99e-01 87.5% 71.9%
2awnC03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 37.0 4.02e-01 97.2% 91.4%
2pi2D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 38.0 3.30e-01 77.8% 95.9%
3jamg01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 45.0 2.95e-01 94.4% 24.2%
2lmcB00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.53 40.0 4.24e-01 98.6% 100.0%
1gqyB02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.52 39.0 2.85e-01 81.9% 89.9%
6ovbA03 2.100.10.10 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain 0.52 44.0 3.39e-01 98.6% 95.2%
3oblA00 2.40.128.450 Mainly Beta › Beta Barrel › Lipocalin › 0.52 44.0 3.72e-01 100.0% 76.5%
2fjlA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 44.0 3.50e-01 97.2% 78.0%
3d31A03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.51 38.0 3.85e-01 93.1% 81.7%
3ibjA02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.51 39.0 3.01e-01 84.7% 63.1%
1n02A00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.51 44.0 3.97e-01 100.0% 98.0%
2bolA03 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 43.0 3.94e-01 95.8% 72.0%
4innA00 2.40.128.520 Mainly Beta › Beta Barrel › Lipocalin › 0.51 44.0 3.58e-01 100.0% 70.5%
6j8yA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.51 39.0 2.74e-01 86.1% 35.8%
1reoA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 44.0 3.55e-01 100.0% 93.9%
3nwsA01 2.40.50.800 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 41.0 3.48e-01 97.2% 73.8%
1ciyA02 2.100.10.10 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain 0.50 43.0 3.25e-01 100.0% 95.4%
4pj2A00 2.40.128.460 Mainly Beta › Beta Barrel › Lipocalin › Periplasmic lysozyme inhibitor of I-type lysozyme 0.50 41.0 3.56e-01 94.4% 78.5%
3cjeA00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.50 40.0 3.26e-01 91.7% 82.7%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3945861 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.65 41.0 3.81e-01 90.3% 50.0%
3200646 220.1.1.201 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7493 0.65 45.0 3.98e-01 72.2% 81.0%
3992373 220.1.1.10 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SSrecog 0.64 46.0 4.20e-01 75.0% 86.3%
3935357 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 46.0 3.91e-01 76.4% 60.0%
3221562 220.1.1.7 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.60 48.0 4.10e-01 100.0% 54.9%
None — 0.60 46.0 3.86e-01 84.7% 77.7%
3459823 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.59 52.0 3.45e-01 95.8% 32.0%
4190134 4104.1.1.1 ↗ beta sandwiches › EscU C-terminal domain-like › EscU C-terminal domain-like › EscU C-terminal domain-like › Bac_export_2 0.59 39.0 3.74e-01 84.7% 57.6%
3907329 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.59 44.0 3.64e-01 100.0% 44.6%
None — 0.59 42.0 3.80e-01 77.8% 66.7%
3496370 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 45.0 3.75e-01 84.7% 79.2%
3423257 5.1.3.142 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.58 49.0 3.17e-01 95.8% 29.2%
3243986 220.1.1.79 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › TBC1D23_C 0.57 50.0 4.49e-01 100.0% 69.5%
351874 4104.1.1.1 ↗ beta sandwiches › EscU C-terminal domain-like › EscU C-terminal domain-like › EscU C-terminal domain-like › Bac_export_2 0.57 41.0 3.53e-01 87.5% 45.9%
3704471 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 48.0 4.45e-01 93.1% 88.9%
3271265 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 50.0 4.25e-01 100.0% 70.0%
3500471 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.56 43.0 3.64e-01 84.7% 73.1%
4389579 5.1.4.100 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Med16_N 0.56 45.0 2.79e-01 90.3% 23.0%
5027867 209.1.1.0 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like 0.56 43.0 3.29e-01 87.5% 68.7%
4385005 218.1.1.8 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.56 46.0 4.28e-01 94.4% 96.8%
5071331 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 46.0 4.39e-01 91.7% 78.8%
3805475 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.55 48.0 3.17e-01 100.0% 93.2%
3676609 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.55 47.0 3.14e-01 95.8% 26.2%
3788462 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.55 45.0 3.00e-01 91.7% 37.6%
3991137 5.1.4.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.55 47.0 3.00e-01 94.4% 21.8%
3591052 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 45.0 4.70e-01 98.6% 100.0%
3924494 2484.5.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.54 42.0 3.67e-01 86.1% 84.3%
3441723 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.54 47.0 3.12e-01 95.8% 24.4%
4626423 5.1.4.169 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.54 46.0 2.99e-01 95.8% 21.8%
3212968 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.54 44.0 3.65e-01 93.1% 67.4%
4085451 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.53 40.0 3.53e-01 100.0% 53.6%
3545968 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 46.0 2.57e-01 97.2% 62.6%
4439630 76.1.1.1 ↗ beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Endotoxin_M 0.53 46.0 3.49e-01 98.6% 89.4%
4089654 218.1.1.8 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.53 43.0 3.88e-01 91.7% 81.0%
3777589 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 47.0 2.90e-01 98.6% 65.9%
3932481 2484.5.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.53 41.0 3.46e-01 86.1% 78.5%
4165306 2.4.1.12 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.53 40.0 3.61e-01 93.1% 57.1%
5062370 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 42.0 3.41e-01 86.1% 76.3%
3896335 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 45.0 2.86e-01 94.4% 20.3%
3865304 2003.1.2.18 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.53 46.0 2.83e-01 100.0% 91.0%
3964664 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.52 36.0 3.73e-01 91.7% 75.0%
3965386 2.4.1.6 ↗ beta barrels › OB-fold › MOP-like › MOP-like › CysA_C_terminal 0.52 39.0 3.40e-01 100.0% 50.0%
5051694 218.4.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Dhaf4260 N-terminal domain › Dhaf4260 N-terminal domain › DUF4213 0.52 44.0 3.95e-01 98.6% 84.5%
3480636 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.52 44.0 2.68e-01 94.4% 17.2%
3933422 2484.5.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.52 38.0 3.30e-01 83.3% 75.4%
4977573 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 45.0 3.65e-01 100.0% 53.1%
4588452 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.52 40.0 4.04e-01 100.0% 90.0%
4944053 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 42.0 4.20e-01 100.0% 92.0%
3940715 2484.5.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.51 39.0 3.23e-01 84.7% 78.5%
4236900 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.51 40.0 3.39e-01 97.2% 49.6%
3227025 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.50 36.0 3.86e-01 93.1% 91.7%
4312097 295.1.1.15 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › UPF0128 0.50 40.0 3.18e-01 93.1% 80.6%
5043054 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.50 43.0 3.93e-01 100.0% 76.0%