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NC_048674.1__YP_009835082.1__HWB29_gp380__00380

Bact-Vir

NC_048674.1__YP_009835082.1__HWB29_gp380__00380

Identity

Accession:
NC_048674 ↗
Kingdom:
phage

Quality

88.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Ceceduovirus› Aeromonas_phage_AS-sw

TaxID: 2026113

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-70
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4c3eM00 1.20.120.1350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain 0.72 63.0 4.85e-01 100.0% 58.1%
5nohA00 1.20.120.1350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain 0.69 61.0 5.34e-01 100.0% 89.3%
4nqfA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.68 60.0 4.71e-01 100.0% 68.3%
4dokA01 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.64 52.0 4.00e-01 89.7% 63.9%
4bpxD00 1.20.930.80 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › 0.63 39.0 2.76e-01 100.0% 20.2%
2wl8C00 1.20.120.900 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pex19, mPTS binding domain 0.62 50.0 4.33e-01 89.7% 75.2%
2zs0A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.62 52.0 4.25e-01 98.5% 85.7%
2q00B00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.61 49.0 4.16e-01 92.6% 86.1%
4iv6B01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.61 41.0 3.55e-01 72.1% 59.5%
3llkA01 1.20.120.1960 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › QSOX sulfhydryl oxidase domain 0.60 47.0 4.21e-01 86.8% 77.6%
2hsbA00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.59 48.0 4.04e-01 94.1% 84.9%
1ywmA02 1.20.1270.150 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Surface Active Protein 0.58 44.0 4.27e-01 80.9% 78.9%
2qkwB02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.58 45.0 3.30e-01 86.8% 81.4%
1h6gA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.57 44.0 3.68e-01 85.3% 93.5%
2k19A00 1.20.1440.140 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.57 46.0 4.13e-01 92.6% 76.5%
1yfmA01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.57 47.0 3.97e-01 98.5% 88.1%
1k92A02 3.90.1260.10 Alpha Beta › Alpha-Beta Complex › Argininosuccinate synthetase, chain A, domain 2 › Argininosuccinate synthetase, chain A, domain 2 0.56 45.0 3.24e-01 91.2% 89.3%
5gviA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.55 46.0 3.10e-01 100.0% 42.2%
2qksA01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.53 39.0 3.39e-01 79.4% 65.1%
4h33A00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 36.0 3.29e-01 72.1% 67.0%
6elqA01 1.20.1270.30 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.52 42.0 3.32e-01 100.0% 84.7%
1u8vB03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.52 42.0 3.04e-01 92.6% 66.2%
2hujA00 1.20.120.440 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like 0.51 42.0 3.59e-01 98.5% 84.8%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4486248 3586.1.1.0 ↗ alpha arrays › Protelomerase stirrup domain › Protelomerase stirrup domain › Protelomerase stirrup domain 0.78 57.0 5.56e-01 77.9% 100.0%
3556827 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.71 57.0 5.65e-01 85.3% 95.7%
5028850 633.12.1.1 ↗ alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like › UPF0147 0.70 57.0 5.30e-01 86.8% 86.7%
4959975 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.70 44.0 4.32e-01 88.2% 58.7%
4959236 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.67 53.0 5.04e-01 85.3% 97.5%
5051495 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.67 55.0 5.00e-01 92.6% 84.2%
3578718 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.66 52.0 4.75e-01 88.2% 80.0%
4989157 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.65 54.0 4.87e-01 95.6% 97.0%
5031714 601.7.1.2 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN 0.64 54.0 4.72e-01 94.1% 84.6%
4997779 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.63 53.0 4.24e-01 94.1% 77.1%
4967550 601.7.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HepT-like 0.63 55.0 4.43e-01 100.0% 80.7%
5011666 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.63 52.0 4.61e-01 92.6% 87.0%
4381116 11.1.1.154 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GlgE_dom_N_S 0.62 52.0 3.79e-01 91.2% 42.1%
4026299 5059.1.1.3 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › TPT 0.62 47.0 3.03e-01 80.9% 93.5%
1822789 601.21.1.5 ↗ alpha bundles › Four-helical up-and-down bundle › FAD-dependent thiol oxidase › FAD-dependent thiol oxidase › FAD_SOX 0.60 47.0 4.07e-01 86.8% 70.4%
5019202 101.1.1.494 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_29 0.59 47.0 4.59e-01 86.8% 100.0%
5017706 101.1.6.14 ↗ alpha arrays › HTH › HTH › TrpR › HTH_29 0.59 47.0 4.45e-01 86.8% 93.8%
4967434 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.59 49.0 4.52e-01 94.1% 96.7%
3723867 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.58 40.0 2.62e-01 70.6% 74.2%
3469983 192.29.1.232 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › SOAR 0.57 40.0 3.45e-01 76.5% 79.1%
5017110 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.56 43.0 4.14e-01 88.2% 97.5%
4945496 632.1.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.55 44.0 4.30e-01 86.8% 88.0%
4955803 601.7.1.2 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN 0.54 43.0 3.75e-01 92.6% 77.4%
3430186 5059.1.1.3 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › TPT 0.54 40.0 2.95e-01 80.9% 88.2%
3611256 101.1.2.236 ↗ alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD 0.53 43.0 2.61e-01 97.1% 77.4%
3808410 142.1.1.0 ↗ alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.52 37.0 3.85e-01 94.1% 78.5%
5079372 601.7.1.2 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN 0.52 41.0 3.66e-01 100.0% 86.6%
3201694 192.29.1.52 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Anthrone_oxy 0.51 42.0 3.24e-01 95.6% 72.8%
3464281 3755.4.1.17 ↗ alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Rx_N 0.51 45.0 3.58e-01 100.0% 68.6%
2757013 4967.1.1.0 ↗ alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases 0.51 39.0 3.70e-01 88.2% 74.1%
3944252 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.51 41.0 2.80e-01 91.2% 75.3%
3620069 633.1.1.0 ↗ alpha bundles › Bromodomain-like › Bromodomain › Bromodomain 0.51 40.0 3.52e-01 88.2% 75.2%