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NC_048679.1__YP_009835518.1__HWB34_gp43__00043

Bact-Vir

NC_048679.1__YP_009835518.1__HWB34_gp43__00043

Identity

Accession:
NC_048679 ↗
Kingdom:
phage

Quality

76.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Nylescharonvirus› Leptospira_phage_LE4

TaxID: 2041383

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 74-150
PDB
Domain cluster: rep: OM868082.1__UPT53432.1__X__00062__D7-97
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1xqbA01 2.40.30.70 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › YaeB-like 0.77 63.0 5.56e-01 88.3% 85.3%
6f2mA02 2.40.30.290 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.77 66.0 6.33e-01 93.5% 97.7%
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.73 59.0 5.67e-01 90.9% 75.6%
2wssA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.73 59.0 5.56e-01 92.2% 73.1%
3gqbA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.72 60.0 6.23e-01 93.5% 98.6%
2v31A01 2.40.30.180 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Ubiquitin-activating enzyme E1, FCCH domain 0.72 64.0 5.92e-01 98.7% 88.7%
6su1D01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.72 55.0 5.23e-01 81.8% 100.0%
1fx0B01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.72 60.0 5.99e-01 92.2% 100.0%
6tdyD01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.71 59.0 5.97e-01 90.9% 100.0%
4b43A03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.71 60.0 5.23e-01 92.2% 72.2%
2qtlA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.71 57.0 5.15e-01 88.3% 100.0%
1i8dA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.71 62.0 5.90e-01 97.4% 98.9%
4g6iC02 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.70 61.0 5.78e-01 97.4% 93.6%
4g6iB01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.70 60.0 5.80e-01 97.4% 98.9%
5zl6A01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.69 60.0 4.81e-01 96.1% 72.8%
4beuA01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.69 60.0 4.61e-01 97.4% 64.0%
1ja1A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.69 58.0 5.00e-01 93.5% 95.1%
2eqnA01 2.40.10.230 Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain 0.69 56.0 5.42e-01 90.9% 93.1%
2zzeA03 2.40.30.130 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.68 56.0 5.18e-01 89.6% 76.5%
2dy3D01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.68 59.0 5.15e-01 100.0% 79.7%
1v0fB03 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.67 56.0 5.50e-01 93.5% 100.0%
4zciA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.66 55.0 5.03e-01 90.9% 88.1%
2j5uA02 2.40.10.340 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 1 0.66 57.0 5.61e-01 97.4% 96.4%
5h7jA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.65 52.0 4.70e-01 87.0% 72.2%
3hurA01 2.40.37.10 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 0.65 56.0 4.48e-01 100.0% 58.4%
4ac9C04 2.40.10.190 Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 0.63 55.0 5.52e-01 100.0% 96.2%
2qf4A01 2.40.10.340 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 1 0.63 54.0 5.38e-01 100.0% 96.2%
3kewA01 2.40.30.130 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.62 50.0 4.93e-01 89.6% 88.1%
2cxkA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 47.0 4.53e-01 88.3% 83.9%
3zpeA00 2.60.90.50 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.57 46.0 3.93e-01 93.5% 62.3%
1o75A04 2.60.40.1270 Mainly Beta › Sandwich › Immunoglobulin-like › Penicillin-binding protein Tp47, domain D 0.57 43.0 4.26e-01 85.7% 78.0%
4a0tA03 2.60.320.30 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › 0.56 46.0 4.48e-01 94.8% 92.2%
1ok0A00 2.60.40.20 Mainly Beta › Sandwich › Immunoglobulin-like › Alpha-amylase inhibitor 0.56 44.0 4.54e-01 92.2% 94.6%
1x5mA01 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 42.0 3.84e-01 84.4% 89.6%
4fe9A01 2.60.40.3640 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 42.0 3.69e-01 85.7% 76.7%
4j27A02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 43.0 4.17e-01 97.4% 78.7%
3vgfA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 40.0 3.90e-01 90.9% 72.9%
2p84A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.52 38.0 3.95e-01 94.8% 82.2%
3e8lC00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 41.0 3.22e-01 89.6% 98.9%
2vbkA00 2.160.20.10 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like 0.51 39.0 2.45e-01 85.7% 12.9%
2hsiA01 2.60.40.1590 Mainly Beta › Sandwich › Immunoglobulin-like › Peptidoglycan hydrolase domains 0.51 38.0 3.77e-01 88.3% 75.6%
1whoA00 2.60.40.760 Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain 0.51 41.0 3.90e-01 94.8% 75.5%
1bliA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 37.0 3.67e-01 89.6% 73.6%
2g3mA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.51 36.0 3.49e-01 87.0% 66.3%
2w5fB01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 42.0 3.48e-01 97.4% 98.0%
ECOD (79)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3177070 7558.1.1.0 ↗ a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase 0.95 82.0 8.09e-01 89.6% 100.0%
4026674 11.21.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.94 86.0 8.52e-01 96.1% 98.8%
3782195 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.93 83.0 8.02e-01 93.5% 97.6%
4027218 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.92 83.0 8.23e-01 94.8% 96.2%
3712506 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.92 84.0 8.09e-01 96.1% 94.1%
3781314 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.91 82.0 7.75e-01 94.8% 97.8%
3597282 11.21.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.91 82.0 8.13e-01 94.8% 98.8%
3739976 7558.1.1.0 ↗ a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase 0.90 82.0 7.94e-01 96.1% 100.0%
3969204 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.90 79.0 8.07e-01 93.5% 98.7%
3944437 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.89 79.0 7.82e-01 93.5% 100.0%
5079674 11.21.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.80 67.0 6.85e-01 90.9% 97.3%
3561733 5.1.3.253 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › CATSPERB_head 0.77 67.0 6.33e-01 94.8% 100.0%
3850571 1.1.7.114 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › CATSPERB_head 0.76 66.0 6.24e-01 94.8% 100.0%
4028468 1.1.7.35 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › E1_FCCH 0.75 65.0 5.88e-01 94.8% 79.0%
4111597 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.74 58.0 6.19e-01 88.3% 100.0%
4943228 1.1.7.146 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_Xtn 0.74 58.0 6.27e-01 87.0% 100.0%
4880414 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.74 61.0 6.39e-01 92.2% 100.0%
4407497 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.74 58.0 6.22e-01 85.7% 100.0%
4281020 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.73 60.0 5.61e-01 92.2% 72.6%
5078547 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.73 61.0 5.69e-01 92.2% 73.7%
3973553 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.73 60.0 6.28e-01 94.8% 100.0%
4047241 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.73 61.0 5.67e-01 93.5% 73.7%
3292420 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.73 61.0 5.77e-01 93.5% 77.8%
3199895 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.73 60.0 5.60e-01 92.2% 72.6%
4273414 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.73 60.0 6.25e-01 93.5% 100.0%
4854958 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.73 60.0 5.63e-01 93.5% 72.9%
4512995 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.73 59.0 6.18e-01 92.2% 98.6%
2814716 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.73 59.0 5.57e-01 92.2% 72.6%
4184958 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.73 59.0 5.79e-01 92.2% 81.2%
4128405 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.73 59.0 6.13e-01 90.9% 97.1%
4087314 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.73 58.0 5.74e-01 90.9% 83.7%
4204303 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.72 60.0 5.72e-01 93.5% 77.8%
199114 1.1.7.35 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › E1_FCCH 0.72 64.0 5.64e-01 98.7% 76.8%
4163711 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.72 57.0 5.60e-01 89.6% 78.8%
4090116 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.72 57.0 5.97e-01 90.9% 97.1%
4038642 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.72 58.0 6.02e-01 92.2% 97.1%
4402716 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.72 61.0 5.96e-01 94.8% 90.6%
4526316 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.72 60.0 5.62e-01 93.5% 74.7%
3204011 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.72 61.0 5.80e-01 93.5% 80.0%
4316004 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.71 58.0 5.66e-01 93.5% 81.2%
4028057 1.1.7.50 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 0.71 61.0 5.10e-01 93.5% 67.7%
4060488 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.71 61.0 6.06e-01 94.8% 97.5%
4195480 1.1.7.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Lum_binding 0.71 63.0 6.00e-01 98.7% 98.9%
4518787 1.1.7.17 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.71 59.0 5.98e-01 92.2% 100.0%
3596767 1.1.15.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like 0.70 58.0 5.33e-01 90.9% 96.0%
5036479 1.1.7.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.69 60.0 5.32e-01 94.8% 70.9%
4602848 1.1.7.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Lum_binding 0.69 60.0 5.77e-01 100.0% 95.6%
3515213 1.1.7.25 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AARP2CN 0.69 57.0 5.58e-01 92.2% 95.3%
5073223 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 59.0 5.76e-01 97.4% 91.8%
5024154 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.67 60.0 5.82e-01 100.0% 95.3%
3804991 1.1.7.94 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF28794 0.67 54.0 5.30e-01 90.9% 98.8%
5046975 1.1.7.21 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RIBIOP_C 0.66 58.0 5.79e-01 100.0% 96.2%
4970805 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 53.0 5.19e-01 92.2% 88.2%
4932394 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 54.0 5.04e-01 97.4% 78.8%
4959432 1.1.7.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.64 53.0 5.27e-01 93.5% 91.3%
3272761 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 48.0 4.40e-01 88.3% 73.0%
3255717 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 47.0 4.65e-01 90.9% 87.1%
3262495 11.1.1.802 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF8390 0.59 48.0 4.71e-01 96.1% 83.5%
4946539 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.58 44.0 4.52e-01 88.3% 86.7%
3250968 11.1.1.29 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.57 47.0 3.59e-01 96.1% 37.0%
3250855 11.1.1.820 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Beta-sand_ComC_2nd 0.56 45.0 4.32e-01 89.6% 81.1%
3267187 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 47.0 4.47e-01 96.1% 84.2%
3924218 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 45.0 3.99e-01 89.6% 68.7%
3331314 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 44.0 4.06e-01 89.6% 74.3%
4960841 4081.1.1.0 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.55 43.0 3.39e-01 92.2% 37.8%
3830010 11.1.1.29 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.55 43.0 4.02e-01 88.3% 77.0%
3759357 11.1.1.29 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.55 44.0 4.30e-01 97.4% 81.1%
4221343 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 43.0 4.26e-01 88.3% 81.0%
3263537 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 43.0 4.24e-01 94.8% 83.5%
3248952 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 43.0 4.25e-01 94.8% 85.9%
3248718 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.53 41.0 3.51e-01 85.7% 57.7%
4949601 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 45.0 4.21e-01 96.1% 84.2%
3953953 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.52 42.0 4.11e-01 93.5% 81.1%
3411159 355.1.1.11 ↗ few secondary structure elements › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › Trefoil/Plexin domain-like › TIG_plexin 0.52 42.0 4.00e-01 94.8% 85.0%
3526348 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 43.0 3.96e-01 96.1% 73.3%
5035688 4081.1.1.0 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.51 37.0 3.21e-01 90.9% 44.3%
5069410 4081.1.1.0 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.51 43.0 3.36e-01 100.0% 59.0%
3262144 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.51 41.0 3.63e-01 94.8% 57.6%
3249571 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 39.0 3.72e-01 89.6% 75.8%
D2 medium residues 173-206_257-275_295-327
PDB
Domain cluster: representative
D3 medium residues 207-256_276-294
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1v0fB03 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.76 61.0 5.69e-01 85.5% 76.5%
2v31A01 2.40.30.180 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Ubiquitin-activating enzyme E1, FCCH domain 0.66 59.0 5.20e-01 100.0% 69.1%
1m1fB00 2.30.30.110 Mainly Beta › Roll › SH3 type barrels. › 0.66 48.0 4.16e-01 76.8% 83.8%
4b3fX02 2.40.30.270 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.66 50.0 4.49e-01 82.6% 64.3%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 46.0 4.96e-01 78.3% 100.0%
1wczA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 45.0 3.78e-01 79.7% 52.2%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 45.0 4.49e-01 79.7% 94.3%
2as9B01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 44.0 3.89e-01 79.7% 57.4%
4k4kA01 2.60.40.2620 Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrillin-like 0.59 51.0 4.26e-01 100.0% 70.9%
4rlzA02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.59 46.0 3.98e-01 87.0% 81.8%
3a2yA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.58 44.0 3.28e-01 82.6% 46.5%
3jcuO01 2.40.160.30 Mainly Beta › Beta Barrel › Porin › Photosystem II, cytochrome c-550 precursor 0.57 43.0 3.21e-01 81.2% 97.7%
3m3pA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.57 39.0 2.75e-01 72.5% 53.8%
4g1vA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 44.0 3.76e-01 87.0% 78.8%
4epsA01 2.60.40.2620 Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrillin-like 0.56 48.0 3.96e-01 98.6% 75.8%
3napA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.55 43.0 2.95e-01 87.0% 59.1%
2v9kA04 3.30.70.3190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 41.0 3.56e-01 82.6% 79.8%
1qdlB00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.54 37.0 2.79e-01 72.5% 49.2%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.54 37.0 4.15e-01 78.3% 100.0%
1o1yA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.53 36.0 2.64e-01 72.5% 51.7%
3ic8A01 3.40.30.110 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.53 41.0 3.11e-01 87.0% 62.7%
4brvA00 2.60.40.730 Mainly Beta › Sandwich › Immunoglobulin-like › SOR catalytic domain 0.53 35.0 2.98e-01 71.0% 70.2%
3v0aB03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 43.0 3.19e-01 97.1% 73.7%
4m8rA01 2.60.40.3920 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 41.0 3.64e-01 88.4% 74.8%
3girA02 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.50 36.0 3.38e-01 76.8% 83.7%
1xjaB00 2.60.120.280 Mainly Beta › Sandwich › Jelly Rolls › Regulatory protein AraC 0.50 43.0 3.41e-01 100.0% 79.9%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5022448 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 53.0 5.16e-01 79.7% 100.0%
3252937 1.1.7.35 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › E1_FCCH 0.68 62.0 5.36e-01 100.0% 78.1%
3272448 11.21.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.68 54.0 4.82e-01 85.5% 71.6%
3710007 4.1.1.372 ↗ beta barrels › SH3 › SH3 › SH3 › PF30207 0.68 50.0 4.18e-01 79.7% 99.2%
2832038 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.65 48.0 4.09e-01 79.7% 80.0%
3627869 4.1.1.347 ↗ beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.65 50.0 3.85e-01 84.1% 71.6%
3741921 1.1.7.81 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel 0.64 49.0 4.30e-01 82.6% 73.3%
3805726 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.62 49.0 4.03e-01 84.1% 82.5%
3250056 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 49.0 4.02e-01 87.0% 71.2%
2643543 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.61 46.0 3.88e-01 82.6% 82.8%
3415428 1.1.7.69 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › MOV-10_beta-barrel 0.60 48.0 4.18e-01 87.0% 69.5%
3711953 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.60 47.0 3.98e-01 85.5% 71.3%
3937299 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 42.0 3.89e-01 76.8% 66.7%
3930366 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 43.0 4.62e-01 79.7% 100.0%
3927795 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 42.0 4.46e-01 76.8% 100.0%
3854638 4.1.1.131 ↗ beta barrels › SH3 › SH3 › SH3 › MLVIN_C 0.58 44.0 3.95e-01 82.6% 59.0%
3464620 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 41.0 4.22e-01 75.4% 100.0%
4319097 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 41.0 4.39e-01 76.8% 93.1%
2756510 4.1.1.131 ↗ beta barrels › SH3 › SH3 › SH3 › MLVIN_C 0.57 45.0 4.16e-01 95.7% 67.4%
4210485 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.56 43.0 4.41e-01 82.6% 93.8%
3940362 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 49.0 3.40e-01 100.0% 83.0%
3672735 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.55 41.0 4.26e-01 82.6% 98.5%
4013361 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.55 38.0 2.93e-01 73.9% 91.2%
3263949 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 43.0 3.95e-01 88.4% 66.3%
3170688 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.55 40.0 4.20e-01 78.3% 98.3%
3956586 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.54 41.0 2.88e-01 84.1% 37.5%
3427072 4.1.1.298 ↗ beta barrels › SH3 › SH3 › SH3 › PF26133 0.54 39.0 3.49e-01 78.3% 98.0%
3334834 3468.1.1.1 ↗ a+b two layers › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HLTF protein HIRAN domain › HIRAN 0.53 43.0 3.82e-01 91.3% 85.6%
3273096 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 40.0 3.21e-01 84.1% 67.3%
1503651 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.53 40.0 3.82e-01 81.2% 77.5%
3686285 10.32.1.4 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.53 40.0 3.48e-01 85.5% 83.5%
4978088 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.52 40.0 3.48e-01 85.5% 78.3%
3381245 11.2.1.42 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF7651 0.52 36.0 2.87e-01 72.5% 85.5%
3483323 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 39.0 2.68e-01 85.5% 56.4%
4355707 10.32.1.243 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF29992 0.51 39.0 3.32e-01 85.5% 72.5%
4598590 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.51 42.0 4.28e-01 95.7% 94.3%
3619932 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 39.0 3.45e-01 85.5% 65.7%
4003090 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.51 37.0 2.84e-01 82.6% 85.8%
D4 medium residues 328-388
PDB