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NC_048679.1__YP_009835528.1__HWB34_gp53__00053

Bact-Vir

NC_048679.1__YP_009835528.1__HWB34_gp53__00053

Identity

Accession:
NC_048679 ↗
Kingdom:
phage

Quality

69.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Nylescharonvirus› Leptospira_phage_LE4

TaxID: 2041383

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-52
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3p7nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 57.0 5.04e-01 98.0% 54.2%
1rr7A02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.75 54.0 5.53e-01 100.0% 81.2%
2ffhA03 1.10.260.30 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › Signal recognition particle, SRP54 subunit, M-domain 0.75 64.0 5.14e-01 100.0% 50.0%
3oopA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 55.0 3.99e-01 96.1% 29.9%
2ecbA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.73 58.0 5.81e-01 100.0% 86.3%
2cfoA05 1.10.10.350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.67 60.0 4.73e-01 100.0% 50.0%
2z15A00 3.90.640.90 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › Anti-proliferative protein, N-terminal domain 0.67 56.0 4.37e-01 98.0% 57.1%
3kxaA02 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.63 53.0 4.96e-01 98.0% 97.0%
2nriB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 52.0 4.34e-01 98.0% 53.3%
1g3nC01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.61 54.0 4.11e-01 100.0% 79.2%
1k6yA01 1.10.10.200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Integrase, N-terminal zinc-binding domain 0.61 43.0 4.49e-01 98.0% 84.8%
3htaC00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.60 45.0 3.20e-01 88.2% 29.6%
2fj0A01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.59 44.0 2.53e-01 82.4% 31.1%
2h7fX02 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.59 51.0 3.31e-01 100.0% 35.7%
2gauA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 51.0 4.42e-01 100.0% 65.4%
3fbzA01 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 46.0 3.91e-01 100.0% 62.7%
3fblA00 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 44.0 3.95e-01 98.0% 76.8%
5svlA01 1.10.287.940 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › atp-gated p2x4 ion channel 0.54 38.0 3.49e-01 76.5% 63.2%
2lrmA00 1.10.890.30 Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › YmgD protein 0.52 35.0 3.18e-01 74.5% 58.3%
8e7cA02 1.10.1840.10 Mainly Alpha › Orthogonal Bundle › main proteinase (3clpro) structure, domain 3 › main proteinase (3clpro) structure, domain 3 0.51 40.0 3.40e-01 92.2% 68.4%
2jarA02 1.10.40.40 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Deoxyribonucleotidase; domain 2 0.50 36.0 3.57e-01 98.0% 74.5%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3409823 101.1.1.112 ↗ alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg 0.78 71.0 5.66e-01 100.0% 62.1%
3682087 101.1.1.19 ↗ alpha arrays › HTH › HTH › Three-helical HTH › SRP_SPB 0.76 67.0 4.56e-01 100.0% 28.9%
3415948 101.1.1.112 ↗ alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg 0.76 69.0 5.53e-01 100.0% 61.1%
4932399 2004.1.1.43 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SRP54 0.76 66.0 3.91e-01 100.0% 13.9%
3402083 101.1.1.112 ↗ alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg 0.76 67.0 5.17e-01 98.0% 51.8%
3397098 101.1.1.112 ↗ alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg 0.76 68.0 5.59e-01 100.0% 64.4%
3887051 101.1.1.112 ↗ alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg 0.75 67.0 5.49e-01 98.0% 63.3%
3901088 101.1.1.112 ↗ alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg 0.75 64.0 5.29e-01 94.1% 61.1%
3904086 101.1.1.112 ↗ alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg 0.75 65.0 5.33e-01 96.1% 62.2%
3397348 101.1.1.112 ↗ alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg 0.74 66.0 5.52e-01 98.0% 67.1%
3905142 101.1.1.112 ↗ alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg 0.74 63.0 6.17e-01 94.1% 100.0%
3397921 101.1.1.112 ↗ alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg 0.74 66.0 5.54e-01 100.0% 71.8%
3391717 101.1.1.112 ↗ alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg 0.73 64.0 5.31e-01 98.0% 63.3%
4946986 101.1.1.19 ↗ alpha arrays › HTH › HTH › Three-helical HTH › SRP_SPB 0.73 62.0 4.80e-01 100.0% 43.5%
3389382 101.1.1.112 ↗ alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg 0.73 63.0 5.24e-01 98.0% 63.3%
4974615 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.72 63.0 5.72e-01 100.0% 74.3%
3407725 101.1.2.477 ↗ alpha arrays › HTH › HTH › winged helix domain › MADF_DNA_bdg 0.70 63.0 4.80e-01 100.0% 47.8%
3266463 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.70 62.0 6.06e-01 100.0% 92.7%
3388840 101.1.1.112 ↗ alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg 0.70 62.0 5.12e-01 100.0% 64.4%
3390891 101.1.1.112 ↗ alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg 0.70 62.0 5.12e-01 100.0% 63.3%
3388570 101.1.1.112 ↗ alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg 0.70 60.0 5.06e-01 100.0% 63.3%
3393967 101.1.1.112 ↗ alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg 0.69 60.0 4.95e-01 100.0% 62.1%
3483479 101.8.1.0 ↗ alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases 0.69 62.0 4.16e-01 100.0% 33.0%
3402232 101.1.1.112 ↗ alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg 0.68 58.0 4.75e-01 100.0% 60.0%
3404621 101.1.1.112 ↗ alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg 0.67 58.0 4.88e-01 100.0% 64.4%
3222238 101.1.2.649 ↗ alpha arrays › HTH › HTH › winged helix domain › PF28730 0.59 49.0 4.57e-01 100.0% 78.6%
3477766 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.59 52.0 4.39e-01 100.0% 75.3%
3596754 101.7.1.0 ↗ alpha arrays › HTH › DEK-C › DEK-C 0.57 46.0 4.39e-01 100.0% 83.1%
3711217 101.7.1.0 ↗ alpha arrays › HTH › DEK-C › DEK-C 0.57 45.0 4.34e-01 100.0% 83.1%
4458167 5104.1.1.1 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.56 43.0 3.17e-01 100.0% 28.5%
3805749 3860.1.1.0 ↗ alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm 0.54 38.0 3.34e-01 100.0% 47.5%
3579266 5055.1.1.11 ↗ extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel › Cation_ATPase_N 0.54 39.0 3.47e-01 74.5% 96.0%