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NC_048684.1__YP_009836020.1__HWB39_gp51__00028

Bact-Vir

NC_048684.1__YP_009836020.1__HWB39_gp51__00028

Identity

Accession:
NC_048684 ↗
Kingdom:
phage

Quality

76.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Manuelvirus› Streptomyces_phage_WRightOn

TaxID: 2053723

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-87
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6tmfT00 1.10.60.20 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 0.74 48.0 5.50e-01 70.1% 90.6%
2khmA01 1.10.10.1350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain 0.72 51.0 4.76e-01 73.6% 71.3%
1q1vA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.69 46.0 5.08e-01 70.1% 85.7%
4jykA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.69 44.0 5.24e-01 71.3% 96.6%
2lsoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 45.0 4.57e-01 71.3% 92.8%
3qqaA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.65 42.0 4.88e-01 72.4% 98.3%
1ff9A03 1.10.1870.10 Mainly Alpha › Orthogonal Bundle › Domain 3, Saccharopine reductase › Domain 3, Saccharopine reductase 0.63 44.0 4.28e-01 73.6% 86.0%
1x4qA01 1.20.1390.10 Mainly Alpha › Up-down Bundle › PWI domain › PWI domain 0.62 38.0 4.09e-01 72.4% 73.2%
2fbqA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.62 46.0 3.54e-01 81.6% 85.4%
2c42A03 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.61 43.0 3.24e-01 73.6% 29.7%
3i45A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.61 43.0 3.32e-01 73.6% 73.7%
3fbzA01 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 43.0 4.12e-01 74.7% 67.6%
1gcvA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.61 41.0 3.55e-01 70.1% 95.7%
1tu9A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.57 39.0 3.44e-01 71.3% 96.2%
4jkzA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.56 47.0 3.79e-01 94.3% 53.1%
3ubcA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.56 40.0 3.51e-01 73.6% 94.7%
3g2eB00 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.55 37.0 3.03e-01 71.3% 34.1%
2d6yA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 42.0 3.36e-01 86.2% 82.8%
1yozA00 1.10.3200.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › AF0941-like 0.53 43.0 4.00e-01 90.8% 81.4%
3on3B00 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.52 36.0 2.97e-01 71.3% 36.0%
3ppbA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.52 40.0 3.23e-01 86.2% 86.7%
1nv8B01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.51 32.0 3.57e-01 72.4% 78.9%
4l7nA01 1.20.142.10 Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › Poly(ADP-ribose) polymerase, regulatory domain 0.51 37.0 3.24e-01 78.2% 69.2%
5dvwA00 1.20.120.1160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.50 35.0 3.08e-01 81.6% 47.7%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4356696 101.1.17.1 ↗ alpha arrays › HTH › HTH › FF domain › Ribosomal_S17e 0.77 50.0 5.51e-01 70.1% 82.9%
5074284 101.1.17.1 ↗ alpha arrays › HTH › HTH › FF domain › Ribosomal_S17e 0.75 50.0 4.77e-01 71.3% 59.0%
3632341 101.1.1.176 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DEK_C 0.75 51.0 5.74e-01 71.3% 100.0%
3184216 101.1.17.19 ↗ alpha arrays › HTH › HTH › FF domain › DEK_C 0.73 51.0 5.70e-01 72.4% 96.9%
4513921 101.7.1.1 ↗ alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.71 46.0 5.35e-01 70.1% 96.7%
3274434 198.1.1.2 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.70 49.0 5.01e-01 73.6% 80.0%
4271175 101.1.2.498 ↗ alpha arrays › HTH › HTH › winged helix domain › PF25870 0.70 55.0 4.76e-01 85.1% 82.2%
3953810 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.70 46.0 4.96e-01 73.6% 78.7%
4284158 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.69 48.0 5.29e-01 73.6% 88.6%
5078841 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 47.0 4.80e-01 70.1% 73.5%
3951353 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.69 46.0 4.77e-01 74.7% 73.8%
1247873 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.69 44.0 4.70e-01 71.3% 74.0%
3593415 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 48.0 5.01e-01 77.0% 80.0%
3248091 198.1.1.2 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.68 47.0 4.81e-01 72.4% 80.0%
3333032 101.7.1.1 ↗ alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.68 44.0 5.12e-01 70.1% 100.0%
386744 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.67 43.0 4.61e-01 71.3% 74.0%
3924903 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 46.0 5.14e-01 73.6% 95.4%
3792105 101.7.1.1 ↗ alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.67 45.0 5.06e-01 71.3% 100.0%
3735853 101.7.1.1 ↗ alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.67 45.0 5.08e-01 71.3% 100.0%
3711217 101.7.1.0 ↗ alpha arrays › HTH › DEK-C › DEK-C 0.66 47.0 5.15e-01 73.6% 100.0%
3969490 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.66 45.0 4.92e-01 73.6% 85.7%
4434935 195.1.1.1 ↗ alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.66 48.0 4.14e-01 77.0% 55.7%
3249014 198.1.1.3 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_1 0.66 44.0 5.08e-01 70.1% 100.0%
3623097 101.1.1.176 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DEK_C 0.66 47.0 5.10e-01 75.9% 92.9%
4936137 7000.1.1.0 ↗ alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.66 46.0 5.20e-01 93.1% 98.5%
3944357 101.1.1.394 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF4158 0.66 47.0 4.78e-01 74.7% 76.5%
3249906 198.1.1.3 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_1 0.65 46.0 4.72e-01 74.7% 81.2%
10305 7516.1.1.25 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › TcdA_TcdB 0.65 47.0 2.97e-01 75.9% 97.1%
3273958 198.1.1.10 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2, SapB_1, Saposin 0.64 46.0 4.73e-01 75.9% 77.6%
339417 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.64 44.0 4.68e-01 73.6% 82.4%
3839043 2004.1.3.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.63 42.0 3.28e-01 70.1% 31.4%
3252039 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.63 44.0 3.27e-01 72.4% 28.6%
5038818 247.1.1.1 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.63 45.0 3.16e-01 74.7% 39.6%
3980588 101.1.1.5 ↗ alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.63 44.0 4.62e-01 75.9% 80.0%
3686127 298.1.1.15 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Sacchrp_dh_C 0.62 45.0 3.22e-01 77.0% 45.6%
3170895 2004.1.3.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.62 44.0 3.18e-01 73.6% 28.2%
6758 298.1.1.15 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Sacchrp_dh_C 0.61 45.0 3.22e-01 78.2% 47.6%
2581460 2004.1.3.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.58 38.0 3.07e-01 72.4% 32.1%
3815745 592.6.1.1 ↗ alpha arrays › PWI domain-like › Pre-mRNA-splicing helicase BRR2 plug domain › Pre-mRNA-splicing helicase BRR2 plug domain › BRR2_plug 0.57 39.0 4.04e-01 70.1% 85.0%
4586835 101.1.1.36 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeobox_KN 0.55 37.0 4.02e-01 72.4% 90.8%
3205680 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.55 34.0 2.93e-01 74.7% 39.3%
5035578 2004.1.3.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.53 39.0 3.03e-01 80.5% 33.3%
401163 2004.1.3.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR 0.52 36.0 2.97e-01 71.3% 36.0%
4003485 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 36.0 3.14e-01 74.7% 73.3%