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NC_048687.1__YP_009836188.1__HWB42_gp07__00007

Bact-Vir

NC_048687.1__YP_009836188.1__HWB42_gp07__00007

Identity

Accession:
NC_048687 ↗
Kingdom:
phage

Quality

54.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Knuthellervirus› Pseudomonas_phage_PMBT14

TaxID: 2059855

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 58-103
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1a62A01 1.10.720.10 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.79 63.0 6.38e-01 91.3% 89.1%
3l0oA01 1.10.720.10 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.72 57.0 5.69e-01 91.3% 85.7%
2kvdA02 1.10.720.30 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain 0.71 58.0 5.41e-01 93.5% 74.1%
1y02A01 1.10.720.140 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.70 58.0 5.00e-01 97.8% 62.8%
2c9wA02 1.10.750.20 Mainly Alpha › Orthogonal Bundle › Elongin C; Chain C, domain 1 › SOCS box 0.68 38.0 4.12e-01 97.8% 63.9%
3eqvA03 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.67 54.0 3.73e-01 97.8% 62.4%
3wqlA01 3.40.1180.10 Alpha Beta › 3-Layer(aba) Sandwich › Undecaprenyl pyrophosphate synthetase › Decaprenyl diphosphate synthase-like 0.67 55.0 3.55e-01 100.0% 97.5%
1k78I00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 47.0 4.42e-01 78.3% 65.5%
1gjsA00 1.10.8.40 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Albumin-binding domain 0.65 45.0 4.10e-01 73.9% 61.5%
2bbrA02 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.64 50.0 4.02e-01 91.3% 45.0%
1n1cA02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.64 44.0 3.77e-01 73.9% 81.7%
2kpqA01 6.10.250.730 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.60 50.0 4.39e-01 100.0% 85.1%
4mixA00 3.90.550.20 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › 0.60 48.0 3.07e-01 97.8% 39.1%
7xhzA01 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.59 41.0 3.08e-01 76.1% 93.5%
1hxiA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 40.0 3.14e-01 76.1% 42.0%
1di1A00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.57 48.0 2.96e-01 100.0% 15.5%
3hl8A02 3.30.1520.20 Alpha Beta › 2-Layer Sandwich › PX Domain › Exonuclease ExoI, domain 2 0.56 39.0 2.86e-01 76.1% 59.0%
7ob9B01 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.55 46.0 3.15e-01 100.0% 49.5%
4i8oA03 1.10.8.1130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Bacterial toxin RNase RnlA/LsoA, C-terminal Dmd-binding domain 0.54 39.0 3.49e-01 100.0% 53.7%
1a1vA03 1.10.820.10 Mainly Alpha › Orthogonal Bundle › RNA Helicase; Chain A, domain 3 › RNA Helicase Chain A , domain 3 0.54 43.0 3.08e-01 91.3% 85.7%
2lruA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 38.0 3.08e-01 71.7% 64.3%
6s10A01 1.10.1710.10 Mainly Alpha › Orthogonal Bundle › Fertility Inhibition Protein O; Chain: A; Domain 1 › ProQ/FinO domain 0.51 36.0 2.91e-01 78.3% 46.1%
3bg2A01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.51 43.0 2.93e-01 100.0% 45.0%
1a22A00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.51 39.0 2.83e-01 100.0% 95.6%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3257377 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.84 69.0 5.99e-01 100.0% 60.0%
3272205 130.1.1.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.84 66.0 6.92e-01 93.5% 100.0%
4292699 130.1.1.3 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.84 67.0 6.84e-01 91.3% 91.1%
3815708 130.1.1.40 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › DUF7722 0.83 67.0 6.81e-01 93.5% 91.1%
5053068 130.1.1.3 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.83 65.0 6.81e-01 89.1% 100.0%
3336810 130.1.1.3 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.83 68.0 6.87e-01 93.5% 93.3%
3440159 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.83 73.0 5.95e-01 100.0% 70.6%
3511721 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.83 70.0 7.13e-01 95.7% 100.0%
3715853 130.1.1.31 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › RNF34L-like_3rd 0.83 70.0 6.91e-01 100.0% 91.7%
3635200 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.81 62.0 5.91e-01 93.5% 70.9%
4616848 130.1.1.3 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.81 65.0 6.56e-01 95.7% 91.1%
3784986 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.81 62.0 6.33e-01 91.3% 88.9%
4433184 130.1.1.3 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.80 69.0 6.52e-01 100.0% 81.8%
3611122 130.1.1.32 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP_RNF34_RFFL (DEPRECATED) 0.80 64.0 6.09e-01 93.5% 76.4%
3248928 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.79 69.0 6.57e-01 100.0% 83.6%
3590596 130.1.1.3 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.79 62.0 6.28e-01 91.3% 91.1%
3392993 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.78 68.0 6.70e-01 100.0% 100.0%
3880607 130.1.1.31 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › RNF34L-like_3rd 0.77 64.0 6.11e-01 95.7% 80.0%
3324494 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.77 65.0 4.95e-01 100.0% 68.7%
4062718 130.1.1.3 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.77 65.0 6.36e-01 97.8% 92.0%
3598653 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.77 62.0 6.26e-01 95.7% 95.6%
3838872 130.1.1.3 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.76 63.0 6.07e-01 100.0% 81.8%
3712494 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.76 61.0 5.84e-01 91.3% 76.4%
3472431 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.76 59.0 6.16e-01 87.0% 100.0%
3268404 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.74 62.0 5.68e-01 93.5% 75.0%
3254994 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.74 58.0 6.12e-01 95.7% 100.0%
3934734 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.73 58.0 5.89e-01 89.1% 93.3%
1233457 130.1.1.3 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.72 57.0 5.66e-01 91.3% 84.0%
3613361 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.71 62.0 6.12e-01 100.0% 96.0%
3783803 102.5.1.0 ↗ alpha arrays › HhH/H2TH › SAM-like subdomain in Sec63-like proteins › SAM-like subdomain in Sec63-like proteins 0.71 56.0 4.75e-01 87.0% 77.3%
3881311 130.1.1.32 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP_RNF34_RFFL (DEPRECATED) 0.71 58.0 5.88e-01 95.7% 97.8%
3249191 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.70 61.0 3.85e-01 97.8% 77.8%
3714674 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.69 59.0 5.66e-01 100.0% 96.4%
3432916 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.65 50.0 4.77e-01 87.0% 74.5%
3924709 101.1.1.4 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PAX 0.65 47.0 4.22e-01 78.3% 58.5%
3789626 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.65 47.0 4.20e-01 78.3% 58.5%
3494018 137.1.1.1 ↗ alpha bundles › A DNA-binding domain in eukaryotic transcription factors › A DNA-binding domain in eukaryotic transcription factors › A DNA-binding domain in eukaryotic transcription factors › bZIP_Maf 0.64 47.0 4.36e-01 95.7% 61.7%
3578362 101.1.1.4 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PAX 0.63 47.0 4.00e-01 80.4% 52.0%
4027117 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.63 49.0 4.63e-01 89.1% 86.2%
3886202 101.1.1.4 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PAX 0.62 45.0 4.29e-01 78.3% 69.1%
3734709 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.61 50.0 4.04e-01 95.7% 84.2%
3219130 108.1.1.36 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_14 0.60 46.0 3.90e-01 91.3% 84.4%
5055562 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.60 45.0 3.76e-01 87.0% 51.1%
5083424 102.1.1.119 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DUF4332 0.58 43.0 3.84e-01 87.0% 62.7%
3212935 101.1.1.4 ↗ alpha arrays › HTH › HTH › Three-helical HTH › PAX 0.57 43.0 4.02e-01 84.8% 70.0%
3909245 109.4.1.257 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PDS5 0.56 50.0 2.92e-01 100.0% 51.0%