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NC_048690.1__YP_009836449.1__HWB45_gp40__00040
Bact-VirNC_048690.1__YP_009836449.1__HWB45_gp40__00040
Identity
- Accession:
- NC_048690 ↗
- Kingdom:
- phage
Quality
87.9
mean pLDDT
Taxonomy
TaxID: 2070195
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-102
Domain cluster:
rep: OQ927986.1__WIF21984.1__X__00031__D13-77
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF09669.16 best | Phage_pRha | 110.7 | 5.60e-32 | 88.7% | 100.0% |
D2
high
residues 125-239
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3iieB03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.60 | 31.0 | 3.47e-01 | 87.8% | 63.5% |
| 1z21A00 | 1.10.10.1000 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Type III secretion system virulence factor YopR, core domain | 0.59 | 29.0 | 3.10e-01 | 84.3% | 52.1% |
| 1irxA05 | 1.10.10.350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.58 | 36.0 | 3.89e-01 | 87.8% | 75.3% |
| 2nsaA00 | 1.10.3120.10 | Mainly Alpha › Orthogonal Bundle › Trigger factor, domain 2 › Trigger factor, C-terminal domain | 0.55 | 43.0 | 3.88e-01 | 86.1% | 92.8% |
| 3qxzA02 | 1.10.12.10 | Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 | 0.54 | 29.0 | 3.73e-01 | 73.0% | 98.3% |
| 1nktA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 37.0 | 2.75e-01 | 71.3% | 91.1% |
| 2rldA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.52 | 34.0 | 3.42e-01 | 84.3% | 65.8% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3624965 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 42.0 | 3.21e-01 | 75.7% | 93.1% |
| 4939754 | 7064.1.1.1 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 | 0.57 | 40.0 | 3.36e-01 | 86.1% | 43.9% |
| 3269125 | 109.4.1.63 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TAP42 | 0.54 | 43.0 | 3.42e-01 | 84.3% | 62.6% |
| 4964044 | 5058.1.1.16 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 | 0.52 | 31.0 | 3.30e-01 | 100.0% | 67.0% |
| 3277854 | 1075.3.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 | 0.52 | 46.0 | 3.71e-01 | 100.0% | 63.8% |
| 3736660 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.51 | 28.0 | 2.70e-01 | 100.0% | 46.7% |
| 3323416 | 3831.1.1.7 ↗ | alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › DUF842 | 0.51 | 37.0 | 3.87e-01 | 83.5% | 82.9% |
| 3400959 | 4177.1.1.8 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_3 | 0.50 | 41.0 | 3.14e-01 | 88.7% | 71.3% |
| None | — | 0.50 | 41.0 | 2.52e-01 | 89.6% | 41.1% |